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      Recently formed Antarctic lakes host less diverse benthic bacterial and diatom communities than their older counterparts

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          Abstract

          Glacier recession is creating new water bodies in proglacial forelands worldwide, including Antarctica. Yet, it is unknown how microbial communities of recently formed “young” waterbodies (originating decades to a few centuries ago) compare with established “old” counterparts (millennia ago). Here, we compared benthic microbial communities of different lake types on James Ross Island, Antarctic Peninsula, using 16S rDNA metabarcoding and light microscopy to explore bacterial and diatom communities, respectively. We found that the older lakes host significantly more diverse bacterial and diatom communities compared to the young ones. To identify potential mechanisms for these differences, linear models and dbRDA analyses suggested combinations of water temperature, pH, and conductivity to be the most important factors for diversity and community structuring, while differences in geomorphological and hydrological stability, though more difficult to quantify, are likely also influential. These results, along with an indicator species analysis, suggest that physical and chemical constraints associated with individual lakes histories are likely more influential to the assembly of the benthic microbial communities than lake age alone. Collectively, these results improve our understanding of microbial community drivers in Antarctic freshwaters, and help predict how the microbial landscape may shift with future habitat creation within a changing environment.

          Abstract

          While glacier recession creates new lakes in Antarctica, they host considerably less diverse bacterial and diatom communities than their older counterparts, but primarily not due to lake age alone.

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            DADA2: High resolution sample inference from Illumina amplicon data

            We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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              Cutadapt removes adapter sequences from high-throughput sequencing reads

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                Author and article information

                Contributors
                Journal
                FEMS Microbiol Ecol
                FEMS Microbiol Ecol
                femsec
                FEMS Microbiology Ecology
                Oxford University Press
                0168-6496
                1574-6941
                September 2023
                29 July 2023
                29 July 2023
                : 99
                : 9
                : fiad087
                Affiliations
                Faculty of Science, Department of Ecology, Charles University , Viničná 7, Prague 2, CZ-12844, Czech Republic
                Faculty of Science, Department of Ecology, Charles University , Viničná 7, Prague 2, CZ-12844, Czech Republic
                Polar-Geo-Lab, Faculty of Science, Department of Geography, Masaryk University , Kotlářská 2, Brno, CZ-61137, Czech Republic
                Alfred Jahn Cold Regions Research Centre, University of Wroclaw , pl. Uniwersytecki 1, Wroclaw 50-137, Poland
                Faculty of Science, Department of Ecology, Charles University , Viničná 7, Prague 2, CZ-12844, Czech Republic
                Polar-Geo-Lab, Faculty of Science, Department of Geography, Masaryk University , Kotlářská 2, Brno, CZ-61137, Czech Republic
                Faculty of Science, Department of Ecology, Charles University , Viničná 7, Prague 2, CZ-12844, Czech Republic
                Faculty of Science, Department of Ecology, Charles University , Viničná 7, Prague 2, CZ-12844, Czech Republic
                Faculty of Science, Department of Ecology, Charles University , Viničná 7, Prague 2, CZ-12844, Czech Republic
                Author notes
                Corresponding author. Faculty of Science, Department of Ecology, Charles University, Viničná 7, Prague 2, CZ-12844, Czech Republic. E-mail: jan.kollar.phd@ 123456gmail.com
                Author information
                https://orcid.org/0000-0002-6624-3350
                https://orcid.org/0000-0003-1800-714X
                Article
                fiad087
                10.1093/femsec/fiad087
                10446143
                37516444
                6625b9c4-723a-4a65-a5b2-dd278467ff37
                © The Author(s) 2023. Published by Oxford University Press on behalf of FEMS.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 03 February 2023
                : 24 July 2023
                : 28 July 2023
                : 23 August 2023
                Page count
                Pages: 15
                Funding
                Funded by: Charles University, DOI 10.13039/100007397;
                Award ID: 204069
                Categories
                Research Article
                AcademicSubjects/SCI01150

                Microbiology & Virology
                16s rdna,climate change,cryosphere,cyanobacteria,diatom,glacier
                Microbiology & Virology
                16s rdna, climate change, cryosphere, cyanobacteria, diatom, glacier

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