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      Lipid degradation and photosynthetic traits after prolonged darkness in four Antarctic benthic diatoms, including the newly described species Planothidium wetzelii sp. nov.

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          Abstract

          In polar regions, the microphytobenthos has important ecological functions in shallow-water habitats, such as on top of coastal sediments. This community is dominated by benthic diatoms, which contribute significantly to primary production and biogeochemical cycling while also being an important component of polar food webs. Polar diatoms are able to cope with markedly changing light conditions and prolonged periods of darkness during the polar night in Antarctica. However, the underlying mechanisms are poorly understood. In this study, five strains of Antarctic benthic diatoms were isolated in the field, and the resulting unialgal cultures were identified as four distinct species, of which one is described as a new species, Planothidium wetzelii sp. nov. All four species were thoroughly examined using physiological, cell biological, and biochemical methods over a fully controlled dark period of 3 months. The results showed that the utilization of storage lipids is one of the key mechanisms in Antarctic benthic diatoms to survive the polar night, although different fatty acids were involved in the investigated taxa. In all tested species, the storage lipid content declined significantly, along with an ultrastructurally observable degradation of the chloroplasts. Surprisingly, photosynthetic performance did not change significantly despite chloroplasts decreasing in thylakoid membranes and an increased number of plastoglobules. Thus, a combination of biochemical and cell biological mechanisms allows Antarctic benthic diatoms to survive the polar night.

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          MEGA11: Molecular Evolutionary Genetics Analysis Version 11

          The Molecular Evolutionary Genetics Analysis (MEGA) software has matured to contain a large collection of methods and tools of computational molecular evolution. Here, we describe new additions that make MEGA a more comprehensive tool for building timetrees of species, pathogens, and gene families using rapid relaxed-clock methods. Methods for estimating divergence times and confidence intervals are implemented to use probability densities for calibration constraints for node-dating and sequence sampling dates for tip-dating analyses. They are supported by new options for tagging sequences with spatiotemporal sampling information, an expanded interactive Node Calibrations Editor , and an extended Tree Explorer to display timetrees. Also added is a Bayesian method for estimating neutral evolutionary probabilities of alleles in a species using multispecies sequence alignments and a machine learning method to test for the autocorrelation of evolutionary rates in phylogenies. The computer memory requirements for the maximum likelihood analysis are reduced significantly through reprogramming, and the graphical user interface has been made more responsive and interactive for very big data sets. These enhancements will improve the user experience, quality of results, and the pace of biological discovery. Natively compiled graphical user interface and command-line versions of MEGA11 are available for Microsoft Windows, Linux, and macOS from www.megasoftware.net .
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            Primary production of the biosphere: integrating terrestrial and oceanic components

            Integrating conceptually similar models of the growth of marine and terrestrial primary producers yielded an estimated global net primary production (NPP) of 104.9 petagrams of carbon per year, with roughly equal contributions from land and oceans. Approaches based on satellite indices of absorbed solar radiation indicate marked heterogeneity in NPP for both land and oceans, reflecting the influence of physical and ecological processes. The spatial and temporal distributions of ocean NPP are consistent with primary limitation by light, nutrients, and temperature. On land, water limitation imposes additional constraints. On land and ocean, progressive changes in NPP can result in altered carbon storage, although contrasts in mechanisms of carbon storage and rates of organic matter turnover result in a range of relations between carbon storage and changes in NPP.
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              Self-consumption: the interplay of autophagy and apoptosis.

              Autophagy and apoptosis control the turnover of organelles and proteins within cells, and of cells within organisms, respectively, and many stress pathways sequentially elicit autophagy, and apoptosis within the same cell. Generally autophagy blocks the induction of apoptosis, and apoptosis-associated caspase activation shuts off the autophagic process. However, in special cases, autophagy or autophagy-relevant proteins may help to induce apoptosis or necrosis, and autophagy has been shown to degrade the cytoplasm excessively, leading to 'autophagic cell death'. The dialogue between autophagy and cell death pathways influences the normal clearance of dying cells, as well as immune recognition of dead cell antigens. Therefore, the disruption of the relationship between autophagy and apoptosis has important pathophysiological consequences.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                31 August 2023
                2023
                : 14
                : 1241826
                Affiliations
                [1] 1Applied Ecology and Phycology, Institute of Biological Sciences, University of Rostock , Rostock, Germany
                [2] 2Botanischer Garten und Botanisches Museum Berlin, Freie Universität Berlin , Berlin, Germany
                [3] 3Department of Botany, Functional Plant Biology, University of Innsbruck , Innsbruck, Austria
                [4] 4Alfred-Wegener-Institute Helmholtz-Center for Polar and Marine Research, Ecological Chemistry , Bremerhaven, Germany
                Author notes

                Edited by: Trista J. Vick-Majors, Michigan Technological University, United States

                Reviewed by: Alessandra Norici, Marche Polytechnic University, Italy; Charles Bachy, GEOMAR Helmholtz Center for Ocean Research Kiel, Helmholtz Association of German Research Centres (HZ), Germany; Josef Elster, University of South Bohemia in České Budĕjovice, Czechia

                *Correspondence: Ulf Karsten ulf.karsten@ 123456uni-rostock.de

                †These authors have contributed equally to this work and share first authorship

                Article
                10.3389/fmicb.2023.1241826
                10500929
                37720158
                3ab2cc2b-079e-4be4-ae0e-e802e1c69206
                Copyright © 2023 Juchem, Schimani, Holzinger, Permann, Abarca, Skibbe, Zimmermann, Graeve and Karsten.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 17 June 2023
                : 08 August 2023
                Page count
                Figures: 9, Tables: 3, Equations: 2, References: 77, Pages: 21, Words: 14195
                Funding
                This study was funded within the framework of the SPP 1158 Antarktisforschung by the DFG under grant numbers ZI 1628/2-1 and KA899/38-1. This study was further supported by the Austrian Science Fund Grant P34181-B to AH.
                Categories
                Microbiology
                Original Research
                Custom metadata
                Extreme Microbiology

                Microbiology & Virology
                antarctica,benthic diatoms,photosynthesis,polar night,lipid consumption,plastid degradation

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