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      Reconstructing the Indian Origin and Dispersal of the European Roma: A Maternal Genetic Perspective

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          Abstract

          Previous genetic, anthropological and linguistic studies have shown that Roma (Gypsies) constitute a founder population dispersed throughout Europe whose origins might be traced to the Indian subcontinent. Linguistic and anthropological evidence point to Indo-Aryan ethnic groups from North-western India as the ancestral parental population of Roma. Recently, a strong genetic hint supporting this theory came from a study of a private mutation causing primary congenital glaucoma. In the present study, complete mitochondrial control sequences of Iberian Roma and previously published maternal lineages of other European Roma were analyzed in order to establish the genetic affinities among Roma groups, determine the degree of admixture with neighbouring populations, infer the migration routes followed since the first arrival to Europe, and survey the origin of Roma within the Indian subcontinent. Our results show that the maternal lineage composition in the Roma groups follows a pattern of different migration routes, with several founder effects, and low effective population sizes along their dispersal. Our data allowed the confirmation of a North/West migration route shared by Polish, Lithuanian and Iberian Roma. Additionally, eleven Roma founder lineages were identified and degrees of admixture with host populations were estimated. Finally, the comparison with an extensive database of Indian sequences allowed us to identify the Punjab state, in North-western India, as the putative ancestral homeland of the European Roma, in agreement with previous linguistic and anthropological studies.

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          Most cited references28

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          Arlequin (version 3.0): An integrated software package for population genetics data analysis

          Arlequin ver 3.0 is a software package integrating several basic and advanced methods for population genetics data analysis, like the computation of standard genetic diversity indices, the estimation of allele and haplotype frequencies, tests of departure from linkage equilibrium, departure from selective neutrality and demographic equilibrium, estimation or parameters from past population expansions, and thorough analyses of population subdivision under the AMOVA framework. Arlequin 3 introduces a completely new graphical interface written in C++, a more robust semantic analysis of input files, and two new methods: a Bayesian estimation of gametic phase from multi-locus genotypes, and an estimation of the parameters of an instantaneous spatial expansion from DNA sequence polymorphism. Arlequin can handle several data types like DNA sequences, microsatellite data, or standard multi-locus genotypes. A Windows version of the software is freely available on http://cmpg.unibe.ch/software/arlequin3.
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            Tracing European founder lineages in the Near Eastern mtDNA pool.

            Founder analysis is a method for analysis of nonrecombining DNA sequence data, with the aim of identification and dating of migrations into new territory. The method picks out founder sequence types in potential source populations and dates lineage clusters deriving from them in the settlement zone of interest. Here, using mtDNA, we apply the approach to the colonization of Europe, to estimate the proportion of modern lineages whose ancestors arrived during each major phase of settlement. To estimate the Palaeolithic and Neolithic contributions to European mtDNA diversity more accurately than was previously achievable, we have now extended the Near Eastern, European, and northern-Caucasus databases to 1,234, 2, 804, and 208 samples, respectively. Both back-migration into the source population and recurrent mutation in the source and derived populations represent major obstacles to this approach. We have developed phylogenetic criteria to take account of both these factors, and we suggest a way to account for multiple dispersals of common sequence types. We conclude that (i) there has been substantial back-migration into the Near East, (ii) the majority of extant mtDNA lineages entered Europe in several waves during the Upper Palaeolithic, (iii) there was a founder effect or bottleneck associated with the Last Glacial Maximum, 20,000 years ago, from which derives the largest fraction of surviving lineages, and (iv) the immigrant Neolithic component is likely to comprise less than one-quarter of the mtDNA pool of modern Europeans.
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              Where west meets east: the complex mtDNA landscape of the southwest and Central Asian corridor.

              The southwestern and Central Asian corridor has played a pivotal role in the history of humankind, witnessing numerous waves of migration of different peoples at different times. To evaluate the effects of these population movements on the current genetic landscape of the Iranian plateau, the Indus Valley, and Central Asia, we have analyzed 910 mitochondrial DNAs (mtDNAs) from 23 populations of the region. This study has allowed a refinement of the phylogenetic relationships of some lineages and the identification of new haplogroups in the southwestern and Central Asian mtDNA tree. Both lineage geographical distribution and spatial analysis of molecular variance showed that populations located west of the Indus Valley mainly harbor mtDNAs of western Eurasian origin, whereas those inhabiting the Indo-Gangetic region and Central Asia present substantial proportions of lineages that can be allocated to three different genetic components of western Eurasian, eastern Eurasian, and south Asian origin. In addition to the overall composite picture of lineage clusters of different origin, we observed a number of deep-rooting lineages, whose relative clustering and coalescent ages suggest an autochthonous origin in the southwestern Asian corridor during the Pleistocene. The comparison with Y-chromosome data revealed a highly complex genetic and demographic history of the region, which includes sexually asymmetrical mating patterns, founder effects, and female-specific traces of the East African slave trade.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2011
                10 January 2011
                : 6
                : 1
                : e15988
                Affiliations
                [1 ]Institute of Evolutionary Biology (CSIC-UPF), CEXS-UPF-PRBB, Barcelona, Spain
                [2 ]Institute of Molecular Pathology and Immunology, University of Porto (IPATIMUP), Porto, Portugal
                [3 ]Faculty of Sciences, University of Porto, Porto, Portugal
                [4 ]Institute of Legal Medicine, Innsbruck Medical University, Innsbruck, Austria
                [5 ]CIBER de Epidemiología y Salud Pública, (CIBERESP), Barcelona, Spain
                Smithsonian Institution National Zoological Park, United States of America
                Author notes

                Conceived and designed the experiments: LG AA MJP DC. Performed the experiments: IM CV A. Gusmão CA VG A. Goios LA. Analyzed the data: IM CV FC WP MJP DC. Wrote the paper: IIM MJP DC.

                Article
                PONE-D-10-00545
                10.1371/journal.pone.0015988
                3018485
                21264345
                cd466990-91f6-4c40-ab9d-2484546e7475
                Mendizabal et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
                History
                : 4 August 2010
                : 2 December 2010
                Page count
                Pages: 10
                Categories
                Research Article
                Biology
                Computational Biology
                Population Genetics
                Effective Population Size
                Evolutionary Biology
                Evolutionary Systematics
                Phylogenetics
                Population Genetics
                Effective Population Size
                Gene Flow
                Gene Pool
                Genetic Drift
                Genetic Polymorphism
                Evolutionary Genetics
                Genetics
                Population Genetics
                Effective Population Size
                Gene Flow
                Gene Pool
                Genetic Drift
                Genetic Polymorphism
                Human Genetics
                Population Biology
                Earth Sciences
                Geography
                Human Geography
                Social and Behavioral Sciences
                Anthropology
                Biological Anthropology

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                Uncategorized

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