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      Identification of Hypericin as a Candidate Repurposed Therapeutic Agent for COVID-19 and Its Potential Anti-SARS-CoV-2 Activity

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          Abstract

          The COVID-19 pandemic has had an unprecedented impact on the global economy and public health. Its etiologic agent, the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is highly transmissible, pathogenic and has a rapid global spread. Currently, the increase in the number of new confirmed cases has been slowed down due to the increase of vaccination in some regions of the world. Still, the rise of new variants has influenced the detection of additional waves of rising cases that some countries have experienced. Since the virus replication cycle is composed of many distinct stages, some viral proteins related to them, as the main-protease (Mpro) and RNA dependent RNA polymerase (RdRp), constitute individual potential antiviral targets. In this study, we challenged the mentioned enzymes against compounds pre-approved by health regulatory agencies in a virtual screening and later in Molecular Mechanics/Poisson–Bolzmann Surface Area (MM/PBSA) analysis. Our results showed that, among the identified potential drugs with anti-SARS-CoV-2 properties, Hypericin, an important component of the Hypericum perforatum that presents antiviral and antitumoral properties, binds with high affinity to viral Mpro and RdRp. Furthermore, we evaluated the activity of Hypericin anti-SARS-CoV-2 replication in an in vitro model of Vero-E6 infected cells. Therefore, we show that Hypericin inhibited viral replication in a dose dependent manner. Moreover, the cytotoxicity of the compound, in cultured cells, was evaluated, but no significant activity was found. Thus, the results observed in this study indicate that Hypericin is an excellent candidate for repurposing for the treatment of COVID-19, with possible inhibition of two important phases of virus maturation.

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            The Protein Data Bank (PDB; http://www.rcsb.org/pdb/ ) is the single worldwide archive of structural data of biological macromolecules. This paper describes the goals of the PDB, the systems in place for data deposition and access, how to obtain further information, and near-term plans for the future development of the resource.
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              We describe the testing and release of AutoDock4 and the accompanying graphical user interface AutoDockTools. AutoDock4 incorporates limited flexibility in the receptor. Several tests are reported here, including a redocking experiment with 188 diverse ligand-protein complexes and a cross-docking experiment using flexible sidechains in 87 HIV protease complexes. We also report its utility in analysis of covalently bound ligands, using both a grid-based docking method and a modification of the flexible sidechain technique. (c) 2009 Wiley Periodicals, Inc.
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                Author and article information

                Contributors
                URI : http://loop.frontiersin.org/people/533843/overview
                URI : http://loop.frontiersin.org/people/1615546/overview
                URI : http://loop.frontiersin.org/people/941828/overview
                URI : http://loop.frontiersin.org/people/504148/overview
                URI : http://loop.frontiersin.org/people/1585567/overview
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                10 February 2022
                2022
                10 February 2022
                : 13
                : 828984
                Affiliations
                [1] 1Laboratório de Virus Respiratórios e do Sarampo, Insituto Oswaldo Cruz, Fundação Oswaldo Cruz (LVRS-IOC-Fiocruz) , Rio de Janeiro, Brazil
                [2] 2Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense (LQFPP-CBB-UENF) , Campos dos Goytacazes, Brazil
                [3] 3Plataforma de Laboratórios de Biossegurança Nível 3, Instituto Oswaldo Cruz, Fundação Oswaldo Cruz (NB3-IOC-Fiocruz) , Rio de Janeiro, Brazil
                Author notes

                Edited by: Burtram Clinton Fielding, University of the Western Cape, South Africa

                Reviewed by: Admire Dube, University of the Western Cape, South Africa; Florette Treurnicht, University of the Witwatersrand, South Africa

                *Correspondence: Jorge Hernandez Fernandez, jhfernandez@ 123456gmail.com

                These authors share first authorship

                This article was submitted to Virology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2022.828984
                8866965
                35222340
                c9293d71-1ed5-40d5-86d7-590f16e7b1f1
                Copyright © 2022 Matos, Caetano, de Almeida Filho, Martins, de Oliveira, Sousa, Horta, Siqueira and Fernandez.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 04 December 2021
                : 13 January 2022
                Page count
                Figures: 2, Tables: 2, Equations: 0, References: 70, Pages: 11, Words: 7496
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                sars-cov-2,covid-19,hypericin,rdrp,mpro,drug repurposing
                Microbiology & Virology
                sars-cov-2, covid-19, hypericin, rdrp, mpro, drug repurposing

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