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      The production of esters by specific sourdough lactic acid bacteria species is limited by the precursor concentrations

      research-article
      1 , 1 , 1 ,
      Applied and Environmental Microbiology
      American Society for Microbiology
      sourdough, lactic acid bacteria, yeasts, esters, fruity flavor, genome mining

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          ABSTRACT

          The production of fruity esters by sourdough lactic acid bacteria (LAB) and yeasts has not been explored in detail. Moreover, the biosynthesis of esters by LAB species under conditions similar to those occurring during sourdough production is still questionable. Concerning yeasts, a genome mining of 75 genomes revealed a strain dependency of the presence of seven specific ester biosynthesis genes. Accordingly, PCR assays to detect these acetate ( ATF1 and ATF2) and ethyl ester ( EHT1 and EEB1) biosynthesis genes were developed and used to screen 91 strains of yeast species. Concerning LAB, a genome mining of 401 genomes revealed a species dependency of the presence of three esterase-encoding genes ( estA, estB, and estC). A phenotypic analysis carried out with a selection of 10 strains of the LAB species Companilactobacillus crustorum, Companilactobacillus nantensis, Companilactobacillus paralimentarius, Fructilactobacillus sanfranciscensis, Lactiplantibacillus xiangfangensis, Levilactobacillus zymae, and Limosilactobacillus fermentum in a wheat sourdough simulation medium (WSSM) supplemented with ester precursor molecules ([higher] alcohols and fatty acids) revealed that their ester biosynthesis capacity was limited by the precursor concentrations. Ethyl acetate and ethyl lactate were produced by all strains, except for those of Frul. sanfranciscensis. These results suggested that one of the esterase-encoding genes considered could be implicated in the ethyl acetate and/or ethyl lactate biosynthesis. Overall, the ester biosynthesis capacity by LAB is of great interest in view of fruity flavor formation during sourdough and sourdough bread productions.

          IMPORTANCE

          The present study gave insights into the production of esters, which impart fruity flavors to fermented foods, by not only sourdough yeasts but also lactic acid bacteria. It showed that some lactic acid bacteria species can synthesize the esters ethyl acetate (sweet notes) and ethyl lactate (creamy notes) under specific conditions. The information gathered during the present study will enable sourdough bakers and companies from the bakery sector to get more information on how to produce sourdoughs that can add fruity notes to the final products after a rational screening and selection of potential starter culture strains.

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          Most cited references129

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          Trimmomatic: a flexible trimmer for Illumina sequence data

          Motivation: Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data. Results: The value of NGS read preprocessing is demonstrated for both reference-based and reference-free tasks. Trimmomatic is shown to produce output that is at least competitive with, and in many cases superior to, that produced by other tools, in all scenarios tested. Availability and implementation: Trimmomatic is licensed under GPL V3. It is cross-platform (Java 1.5+ required) and available at http://www.usadellab.org/cms/index.php?page=trimmomatic Contact: usadel@bio1.rwth-aachen.de Supplementary information: Supplementary data are available at Bioinformatics online.
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            Basic local alignment search tool.

            A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score. Recent mathematical results on the stochastic properties of MSP scores allow an analysis of the performance of this method as well as the statistical significance of alignments it generates. The basic algorithm is simple and robust; it can be implemented in a number of ways and applied in a variety of contexts including straightforward DNA and protein sequence database searches, motif searches, gene identification searches, and in the analysis of multiple regions of similarity in long DNA sequences. In addition to its flexibility and tractability to mathematical analysis, BLAST is an order of magnitude faster than existing sequence comparison tools of comparable sensitivity.
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              Complex heatmaps reveal patterns and correlations in multidimensional genomic data.

              Parallel heatmaps with carefully designed annotation graphics are powerful for efficient visualization of patterns and relationships among high dimensional genomic data. Here we present the ComplexHeatmap package that provides rich functionalities for customizing heatmaps, arranging multiple parallel heatmaps and including user-defined annotation graphics. We demonstrate the power of ComplexHeatmap to easily reveal patterns and correlations among multiple sources of information with four real-world datasets.
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                Author and article information

                Contributors
                Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: SoftwareRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review and editing
                Role: MethodologyRole: SoftwareRole: SupervisionRole: ValidationRole: Writing – review and editing
                Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: Project administrationRole: ResourcesRole: SupervisionRole: ValidationRole: Writing – original draftRole: Writing – review and editing
                Role: Editor
                Journal
                Appl Environ Microbiol
                Appl Environ Microbiol
                aem
                Applied and Environmental Microbiology
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                0099-2240
                1098-5336
                March 2025
                27 February 2025
                27 February 2025
                : 91
                : 3
                : e02216-24
                Affiliations
                [1 ]Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Department of Bioengineering Sciences, Faculty of Sciences and Bioengineering Sciences, Vrije Universiteit Brussel, Ringgold 70493; , Brussels, Belgium
                Universita degli Studi di Napoli Federico II; , Portici, Italy
                Author notes
                Address correspondence to Luc De Vuyst, luc.de.vuyst@ 123456vub.be

                The authors declare no conflict of interest.

                Author information
                https://orcid.org/0000-0002-4949-262X
                https://orcid.org/0000-0002-7534-7186
                Article
                aem02216-24 aem.02216-24
                10.1128/aem.02216-24
                11921326
                40013785
                c3cdb72f-394e-4b02-a9fe-3d09795abeee
                Copyright © 2025 Pradal et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                : 07 November 2024
                : 01 February 2025
                Page count
                supplementary-material: 1, authors: 3, Figures: 4, Tables: 1, Equations: 1, References: 130, Pages: 22, Words: 14264
                Funding
                Funded by: Vrije Universiteit Brussel (VUB);
                Award ID: SRP71, IOF3017
                Award Recipient :
                Funded by: Flemish Agency for Innovation and Entrepreneurship;
                Award ID: ICON HBC.2019.0104
                Award Recipient :
                Categories
                Food Microbiology
                food-microbiology, Food Microbiology
                Custom metadata
                March 2025

                Microbiology & Virology
                sourdough,lactic acid bacteria,yeasts,esters,fruity flavor,genome mining
                Microbiology & Virology
                sourdough, lactic acid bacteria, yeasts, esters, fruity flavor, genome mining

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