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      Screening and evaluation of skin potential probiotic from high-altitude Tibetans to repair ultraviolet radiation damage

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          Abstract

          Human skin microbes play critical roles in skin health and diseases. Microbes colonizing on the skin of Tibetans living in the high-altitude area for generations may have a stronger ability to resist the harsh environment, such as high ultraviolet radiation (UV). Isolation of a potential probiotic from Tibetans skin is beneficial for resistance of skin disease for humans in the world. In this study, the signature microbiota for Tibetan skin were characterized compared to low-altitude humans. Next, using culture-omics, 118 species were isolated. The culturability of high-altitude of Tibetan skin microbiome reached approximate 66.8%. Next, we found that one strain, Pantoea eucrina, had the greatest ability to repair UV damage to the skin as the lowest pathological score was observed in this group. Interestingly, another animal trial found this bacterium resisted UV rather than its metabolites. Using whole genome sequencing, this strain P. eucrina KBFS172 was confirmed, and its functions were annotated. It might involve in the metabolic pathway of carotenoid biosynthesis with anti-oxidative stress properties, which plays critical roles in UV-damage repair. In conclusion, we characterized the signature microbes of skin in high-altitude Tibetans, isolated a skin bacterium of Pantoea eucrina KBFS172 which could repair UV damage via involving the metabolic pathway of carotenoid biosynthesis. Our results provide a new potential skin probiotic for skin disease prevention or sunburn.

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          Most cited references67

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              Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

              S Altschul (1997)
              The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased substantially while enhancing their sensitivity to weak similarities. A new criterion for triggering the extension of word hits, combined with a new heuristic for generating gapped alignments, yields a gapped BLAST program that runs at approximately three times the speed of the original. In addition, a method is introduced for automatically combining statistically significant alignments produced by BLAST into a position-specific score matrix, and searching the database using this matrix. The resulting Position-Specific Iterated BLAST (PSI-BLAST) program runs at approximately the same speed per iteration as gapped BLAST, but in many cases is much more sensitive to weak but biologically relevant sequence similarities. PSI-BLAST is used to uncover several new and interesting members of the BRCT superfamily.
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                Author and article information

                Contributors
                URI : https://loop.frontiersin.org/people/2074810/overviewRole: Role: Role: Role: Role:
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                URI : https://loop.frontiersin.org/people/640517/overviewRole: Role: Role:
                URI : https://loop.frontiersin.org/people/402276/overviewRole: Role: Role: Role: Role:
                URI : https://loop.frontiersin.org/people/641365/overviewRole: Role: Role: Role:
                URI : https://loop.frontiersin.org/people/1239264/overviewRole: Role: Role: Role: Role: Role: Role: Role:
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                19 October 2023
                2023
                : 14
                : 1273902
                Affiliations
                [1] 1Guangdong Provincial Key Laboratory of Animal Molecular Design and Precise Breeding, College of Life Science and Engineering, Foshan University , Foshan, China
                [2] 2School of Life Science and Engineering, Foshan University , Foshan, China
                [3] 3Animal Husbandry and Fisheries Technology Extension Station , Chongqing, China
                [4] 4Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University , Chengdu, China
                Author notes

                Edited by: Yijuan Xu, South China Agricultural University, China

                Reviewed by: Yongyi Shen, South China Agricultural University, China; Daniela Pinto, Giuliani S.p.A., Italy

                *Correspondence: Ying Li, yingli@ 123456fosu.edu.cn

                These authors have contributed equally to this work

                Article
                10.3389/fmicb.2023.1273902
                10620709
                37928688
                abae6219-c722-40c2-a173-6ea97c860018
                Copyright © 2023 Zhang, Ran, Hua, Deng, Zeng, Chai and Li.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 07 August 2023
                : 29 September 2023
                Page count
                Figures: 7, Tables: 1, Equations: 0, References: 67, Pages: 13, Words: 8032
                Funding
                The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This project was supported by National Natural Science Foundation of China (32170430), Guangdong Provincial Key Laboratory of Animal Molecular Design and Precise Breeding (2019B030301010), and Key Laboratory of Animal Molecular Design and Precise Breeding of Guangdong Higher Education Institutes (2019KSYS011).
                Categories
                Microbiology
                Original Research
                Custom metadata
                Microbial Symbioses

                Microbiology & Virology
                skin microbiota,skin disease,uv damage,high altitude,culturomics,probiotic
                Microbiology & Virology
                skin microbiota, skin disease, uv damage, high altitude, culturomics, probiotic

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