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      A practical introduction to EEG Time-Frequency Principal Components Analysis (TF-PCA)

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          Abstract

          This EEG methods tutorial provides both a conceptual and practical introduction to a promising data reduction approach for time-frequency representations of EEG data: Time-Frequency Principal Components Analysis (TF-PCA). Briefly, the unique value of TF-PCA is that it provides a data-reduction approach that does not rely on strong a priori constraints regarding the specific timing or frequency boundaries for an effect of interest. Given that the time-frequency characteristics of various neurocognitive process are known to change across development, the TF-PCA approach is thus particularly well suited for the analysis of developmental TF data. This tutorial provides the background knowledge, theory, and practical information needed to allow individuals with basic EEG experience to begin applying the TF-PCA approach to their own data. Crucially, this tutorial article is accompanied by a companion GitHub repository that contains example code, data, and a step-by-step guide of how to perform TF-PCA: https://github.com/NDCLab/tfpca-tutorial. Although this tutorial is framed in terms of the utility of TF-PCA for developmental data, the theory, protocols and code covered in this tutorial article and companion GitHub repository can be applied more broadly across populations of interest.

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          EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis

          We have developed a toolbox and graphic user interface, EEGLAB, running under the crossplatform MATLAB environment (The Mathworks, Inc.) for processing collections of single-trial and/or averaged EEG data of any number of channels. Available functions include EEG data, channel and event information importing, data visualization (scrolling, scalp map and dipole model plotting, plus multi-trial ERP-image plots), preprocessing (including artifact rejection, filtering, epoch selection, and averaging), independent component analysis (ICA) and time/frequency decompositions including channel and component cross-coherence supported by bootstrap statistical methods based on data resampling. EEGLAB functions are organized into three layers. Top-layer functions allow users to interact with the data through the graphic interface without needing to use MATLAB syntax. Menu options allow users to tune the behavior of EEGLAB to available memory. Middle-layer functions allow users to customize data processing using command history and interactive 'pop' functions. Experienced MATLAB users can use EEGLAB data structures and stand-alone signal processing functions to write custom and/or batch analysis scripts. Extensive function help and tutorial information are included. A 'plug-in' facility allows easy incorporation of new EEG modules into the main menu. EEGLAB is freely available (http://www.sccn.ucsd.edu/eeglab/) under the GNU public license for noncommercial use and open source development, together with sample data, user tutorial and extensive documentation.
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            Principal component analysis: a review and recent developments.

            Large datasets are increasingly common and are often difficult to interpret. Principal component analysis (PCA) is a technique for reducing the dimensionality of such datasets, increasing interpretability but at the same time minimizing information loss. It does so by creating new uncorrelated variables that successively maximize variance. Finding such new variables, the principal components, reduces to solving an eigenvalue/eigenvector problem, and the new variables are defined by the dataset at hand, not a priori, hence making PCA an adaptive data analysis technique. It is adaptive in another sense too, since variants of the technique have been developed that are tailored to various different data types and structures. This article will begin by introducing the basic ideas of PCA, discussing what it can and cannot do. It will then describe some variants of PCA and their application.
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              The Application of Electronic Computers to Factor Analysis

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                Author and article information

                Contributors
                Journal
                Dev Cogn Neurosci
                Dev Cogn Neurosci
                Developmental Cognitive Neuroscience
                Elsevier
                1878-9293
                1878-9307
                13 May 2022
                June 2022
                13 May 2022
                : 55
                : 101114
                Affiliations
                [a ]Florida International University and the Center for Children and Families, Miami, FL, USA
                [b ]Michigan State University, East Lansing, MI, USA
                [c ]University of Maryland, College Park, USA
                Author notes
                [* ]Correspondence to: 11200 SW 8th Street, DM 256, Miami, FL 33199, USA. gbuzzell@ 123456fiu.edu
                [1]

                Authors contributed equally to this manuscript (co-first authors)

                Article
                S1878-9293(22)00057-3 101114
                10.1016/j.dcn.2022.101114
                9156873
                35636345
                74aab64f-c1fe-4898-98a3-69dbb8a09255
                © 2022 Published by Elsevier Ltd.

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 1 August 2021
                : 14 April 2022
                : 10 May 2022
                Categories
                Original Research

                Neurosciences
                eeg,analysis methods,time-frequency,principal components analysis,pca,development
                Neurosciences
                eeg, analysis methods, time-frequency, principal components analysis, pca, development

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