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      Evolving Understanding of the Causes of Pneumonia in Adults, With Special Attention to the Role of Pneumococcus

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          Abstract

          Understanding of the microbiology of pneumonia has evolved. The role of pneumococcus has greatly declined. “Atypical” agents cause only a very small proportion of cases. Viruses are prominent. Intensive investigations fail to identify a causative organism in more than 50% of cases.

          Abstract

          Before 1945, Streptococcus pneumoniae caused more than 90% of cases of pneumonia in adults. After 1950, the proportion of pneumonia caused by pneumococcus began to decline. Pneumococcus has continued to decline; at present, this organism is identified in fewer than fewer10%–15% of cases. This proportion is higher in Europe, a finding likely related to differences in vaccination practices and smoking. Gram-negative bacilli, Staphylococcus aureus, Chlamydia, Mycoplasma, and Legionella are each identified in 2%–5% of patients with pneumonia who require hospitalization. Viruses are found in 25% of patients, up to one-third of these have bacterial coinfection. Recent studies fail to identify a causative organism in more than 50% of cases, which remains the most important challenge to understanding lower respiratory infection. Our findings have important implications for antibiotic stewardship and should be considered as new policies for empiric pneumonia management are developed.

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          Most cited references125

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          Legionnaires' disease: description of an epidemic of pneumonia.

          An explosive, common-source outbreak of pneumonia caused by a previously unrecognized bacterium affected primarily persons attending an American Legion convention in Philadelphia in July, 1976. Twenty-nine of 182 cases were fatal. Spread of the bacterium appeared to be air borne. The source of the bacterium was not found, but epidemiologic analysis suggested that exposure may have occurred in the lobby of the headquarters hotel or in the area immediately surrounding the hotel. Person-to-person spread seemed not to have occurred. Many hotel employees appeared to be immune, suggesting that the agent may have been present in the vicinity, perhaps intermittently, for two or more years.
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            Etiology of Community-Acquired Pneumonia: Increased Microbiological Yield with New Diagnostic Methods

            Abstract Background The microbial etiology of community-acquired pneumonia (CAP) is still not well characterized. During the past few years, polymerase chain reaction (PCR)-based methods have been developed for many pathogens causing respiratory tract infections. The aim of this study was to determine the etiology of CAP among adults—especially the occurrence of mixed infections among patients with CAP—by implementing a new diagnostic PCR platform combined with conventional methods. Methods Adults admitted to Karolinska University Hospital were studied prospectively during a 12-month period. Microbiological testing methods included culture from blood, sputum, and nasopharyngeal secretion samples; sputum samples analyzed by real-time quantitative PCR for Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis; nasopharyngeal specimens analyzed by use of PCR; serological testing for Mycoplasma pneumoniae, Chlamydophila pneumoniae, and viruses common in the respiratory tract; and urine antigen assays for detection of pneumococcal and Legionella pneumophila antigens. Results A microbial etiology could be identified for 67% of the patients (n = 124). For patients with complete sampling, a microbiological agent was identified for 89% of the cases. The most frequently detected pathogens were S. pneumoniae (70 patients [38]) and respiratory virus (53 patients [29]). Two or more pathogens were present in 43 (35%) of 124 cases with a determined etiology. Conclusions By supplementing traditional diagnostic methods with new PCR-based methods, a high microbial yield was achieved. This was especially evident for patients with complete sampling. Mixed infections were frequent (most commonly S. pneumoniae together with a respiratory virus).
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              Comprehensive Molecular Testing for Respiratory Pathogens in Community-Acquired Pneumonia

              This is the first time a comprehensive, multipathogen, quantitative and qualitative molecular approach for respiratory bacteria and viruses has been compared with traditional diagnostic methods on a large hospitalized pneumonia cohort, with estimation of potential effects on antibiotic prescribing.
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                Author and article information

                Journal
                Clin Infect Dis
                Clin. Infect. Dis
                cid
                Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America
                Oxford University Press (US )
                1058-4838
                1537-6591
                15 November 2017
                27 September 2017
                : 65
                : 10
                : 1736-1744
                Affiliations
                [1 ] Departments of Medicine and Molecular Virology and Microbiology, Baylor College of Medicine
                [2 ] Michael E. DeBakey Veterans Affairs Medical Center , Houston, Texas
                [3 ] Massachusetts General Hospital
                [4 ] Harvard Medical School , Boston, Massachusetts
                [5 ] Johns Hopkins University School of Medicine , Baltimore, Maryland
                Author notes
                Correspondence: D. M. Musher, VA Medical Center, Houston TX 77030 ( Daniel.musher@ 123456va.gov ).
                Article
                cix549
                10.1093/cid/cix549
                7108120
                29028977
                73822fa6-3369-4c7b-9beb-1812b7b270b0
                © The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

                This article is made available via the PMC Open Access Subset for unrestricted re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the COVID-19 pandemic or until permissions are revoked in writing. Upon expiration of these permissions, PMC is granted a perpetual license to make this article available via PMC and Europe PMC, consistent with existing copyright protections.

                History
                : 03 February 2017
                : 05 September 2017
                Page count
                Pages: 9
                Categories
                Review Article
                Editor's Choice

                Infectious disease & Microbiology
                community-acquired pneumonia,streptococcus pneumoniae,pneumococcus,etiology,antibiotic stewardship

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