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      2019 Novel coronavirus infection and gastrointestinal tract

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          Abstract

          1 Since December 2019, several cases of pneumonia of unknown etiology have been reported in Wuhan, Hubei Province, China. On 7 January 2020, a novel coronavirus was identified from a throat swab sample of a patient by the Chinese Center for Disease Control and Prevention, and was subsequently named 2019 novel coronavirus (COVID‐19) by the World Health Organization. As of 21 February 2020, nearly 75 114 cases of human COVID‐19 infections have been confirmed in China, with at least 2239 reported deaths. Additional cases have spread to other countries in Asia, Europe, America, Oceania, and Africa. Six coronaviruses species are known to cause human diseases, among them severe acute respiratory syndrome coronavirus (SARS‐CoV) and Middle East respiratory syndrome coronavirus (MERS‐CoV) are both zoonotic in origin, which can cause severe respiratory illness and high mortality. And COVID‐19 is the seventh. Phylogenetic analysis of the complete viral genome (29 903 nucleotides) has shown that the COVID‐19 is most closely related (89.1% nucleotide similarity) to a group of SARS‐like coronaviruses.1 This fact could partly explain the behavior of this novel coronavirus in human infection. Retrospective studies from Wuhan, China have indicated that the main clinical manifestations of COVID‐19 are fever, cough and dyspnea. Less common symptoms include the production of sputum, headache, hemoptysis and some gastrointestinal symptoms. It seems that gastrointestinal symptoms, such as diarrhea (2%‐10.1%), and nausea and vomiting (1%‐3.6%), are not very common at present.2, 3 However, a significant proportion of patients presented initially with those atypical gastrointestinal symptoms. There is evidence not only of animal‐to‐human transmission but of human‐to‐human transmission of COVID‐19 among close contacts or through virus‐laden aerosols. Although more evidence is needed, Zhang et al4 from the People's Hospital of Wuhan University have reported the presence of viral nucleic acids in the fecal samples and anal swabs of patients with COVID‐19. Therefore, there is a possibility of fecal–oral transmission in COVID‐19 infection. More attention should be paid to the hand hygiene and disinfection of patients' vomitus, feces, and other bodily fluids. Previous studies have uncovered several receptors to which different coronaviruses bind, such as angiotensin‐converting enzyme 2 (ACE2) for SARS‐CoV. One study showed by molecular modeling that there is a structural similarity between the receptor‐binding domains of SARS‐CoV and COVID‐19, which means that COVID‐19 may use ACE2 as the receptor despite the presence of amino acid mutations in the COVID‐19 receptor‐binding domain.5 This finding was subsequently verified by another study which suggested that liver abnormalities might also occur in patients with COVID‐19 because the cholangiocytes are targeted by these viruses through ACE2.6 ACE2 is known to be abundant in the epithelia of the lungs and intestine in humans, which might enhance the evidence of this possible route for COVID‐19. Yet other authors have indicated that the expression of ACE2 is primarily located on the luminal surface of differentiated small intestinal epithelial cells, whereas lower expression has been observed in the crypt cells and the colon.7 They have also linked the amino acid transport function of ACE2 to the microbial ecology in the gastrointestinal tract in which ACE2 mutants exhibit decreased expression of antimicrobial peptides and show altered gut microbial composition. Therefore, we speculate that COVID‐19 may, to some extent, be related to the gut microbiota. However, the connection between the lung and the gastrointestinal tract is not completely understood. It is well known that the respiratory tract houses its own microbiota, but patients with respiratory infections generally have gut dysfunction or secondary gut dysfunction complications, which are related to a more severe clinical course of the disease, thus indicating gut–lung crosstalk. This phenomenon can also be observed in the patients with COVID‐19. Numerous studies have shown that modulating gut microbiota can reduce enteritis and ventilator‐associated pneumonia, and it can reverse certain side effects of antibiotics to avoid early influenza virus replication in lung epithelia.8 Currently, there is no direct clinical evidence that the modulation of gut microbiota plays the therapeutic role in the treatment of COVID‐19, but we speculate that targeting gut microbiota may be a new therapeutic option or at least an adjuvant therapeutic choice. In early February, the guidance (version 5) established by the China's National Health Commission and National Administration of Traditional Chinese Medicine9 recommended that in the treatment of patients with severe COVID‐19 infection, probiotics may be used to maintain the balance of intestinal microecology and prevent secondary bacterial infection, which shows that the Chinese government and first‐line medical staffs accept the importance of the role of gut microbiota in COVID‐19 infection. Huge efforts from the Chinese government and accelerated related research have been done over this period. Although no specific antiviral treatment has been recommended to date, we speculate that probiotics may modulate the gut microbiota to alter the gastrointestinal symptoms favorably and may also protect the respiratory system. Further studies may focus on this point. It would be interesting to investigate whether the benefits of ACE2 on pulmonary disease may be mediated via modulation of gut and/or lung microbiota. Finally, we call upon all first‐line medical staffs to be cautious and pay more attention to atypical patients with an initial presentation of gastrointestinal symptoms, especially those from the epidemic area. We hope that, with the joint efforts and great support, COVID‐19 will soon be overcome. 2 CONFLICT OF INTEREST None.

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          Most cited references6

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          Clinical Characteristics of 138 Hospitalized Patients With 2019 Novel Coronavirus–Infected Pneumonia in Wuhan, China

          In December 2019, novel coronavirus (2019-nCoV)-infected pneumonia (NCIP) occurred in Wuhan, China. The number of cases has increased rapidly but information on the clinical characteristics of affected patients is limited.
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            Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study

            Summary Background In December, 2019, a pneumonia associated with the 2019 novel coronavirus (2019-nCoV) emerged in Wuhan, China. We aimed to further clarify the epidemiological and clinical characteristics of 2019-nCoV pneumonia. Methods In this retrospective, single-centre study, we included all confirmed cases of 2019-nCoV in Wuhan Jinyintan Hospital from Jan 1 to Jan 20, 2020. Cases were confirmed by real-time RT-PCR and were analysed for epidemiological, demographic, clinical, and radiological features and laboratory data. Outcomes were followed up until Jan 25, 2020. Findings Of the 99 patients with 2019-nCoV pneumonia, 49 (49%) had a history of exposure to the Huanan seafood market. The average age of the patients was 55·5 years (SD 13·1), including 67 men and 32 women. 2019-nCoV was detected in all patients by real-time RT-PCR. 50 (51%) patients had chronic diseases. Patients had clinical manifestations of fever (82 [83%] patients), cough (81 [82%] patients), shortness of breath (31 [31%] patients), muscle ache (11 [11%] patients), confusion (nine [9%] patients), headache (eight [8%] patients), sore throat (five [5%] patients), rhinorrhoea (four [4%] patients), chest pain (two [2%] patients), diarrhoea (two [2%] patients), and nausea and vomiting (one [1%] patient). According to imaging examination, 74 (75%) patients showed bilateral pneumonia, 14 (14%) patients showed multiple mottling and ground-glass opacity, and one (1%) patient had pneumothorax. 17 (17%) patients developed acute respiratory distress syndrome and, among them, 11 (11%) patients worsened in a short period of time and died of multiple organ failure. Interpretation The 2019-nCoV infection was of clustering onset, is more likely to affect older males with comorbidities, and can result in severe and even fatal respiratory diseases such as acute respiratory distress syndrome. In general, characteristics of patients who died were in line with the MuLBSTA score, an early warning model for predicting mortality in viral pneumonia. Further investigation is needed to explore the applicability of the MuLBSTA score in predicting the risk of mortality in 2019-nCoV infection. Funding National Key R&D Program of China.
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              Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

              Summary Background In late December, 2019, patients presenting with viral pneumonia due to an unidentified microbial agent were reported in Wuhan, China. A novel coronavirus was subsequently identified as the causative pathogen, provisionally named 2019 novel coronavirus (2019-nCoV). As of Jan 26, 2020, more than 2000 cases of 2019-nCoV infection have been confirmed, most of which involved people living in or visiting Wuhan, and human-to-human transmission has been confirmed. Methods We did next-generation sequencing of samples from bronchoalveolar lavage fluid and cultured isolates from nine inpatients, eight of whom had visited the Huanan seafood market in Wuhan. Complete and partial 2019-nCoV genome sequences were obtained from these individuals. Viral contigs were connected using Sanger sequencing to obtain the full-length genomes, with the terminal regions determined by rapid amplification of cDNA ends. Phylogenetic analysis of these 2019-nCoV genomes and those of other coronaviruses was used to determine the evolutionary history of the virus and help infer its likely origin. Homology modelling was done to explore the likely receptor-binding properties of the virus. Findings The ten genome sequences of 2019-nCoV obtained from the nine patients were extremely similar, exhibiting more than 99·98% sequence identity. Notably, 2019-nCoV was closely related (with 88% identity) to two bat-derived severe acute respiratory syndrome (SARS)-like coronaviruses, bat-SL-CoVZC45 and bat-SL-CoVZXC21, collected in 2018 in Zhoushan, eastern China, but were more distant from SARS-CoV (about 79%) and MERS-CoV (about 50%). Phylogenetic analysis revealed that 2019-nCoV fell within the subgenus Sarbecovirus of the genus Betacoronavirus, with a relatively long branch length to its closest relatives bat-SL-CoVZC45 and bat-SL-CoVZXC21, and was genetically distinct from SARS-CoV. Notably, homology modelling revealed that 2019-nCoV had a similar receptor-binding domain structure to that of SARS-CoV, despite amino acid variation at some key residues. Interpretation 2019-nCoV is sufficiently divergent from SARS-CoV to be considered a new human-infecting betacoronavirus. Although our phylogenetic analysis suggests that bats might be the original host of this virus, an animal sold at the seafood market in Wuhan might represent an intermediate host facilitating the emergence of the virus in humans. Importantly, structural analysis suggests that 2019-nCoV might be able to bind to the angiotensin-converting enzyme 2 receptor in humans. The future evolution, adaptation, and spread of this virus warrant urgent investigation. Funding National Key Research and Development Program of China, National Major Project for Control and Prevention of Infectious Disease in China, Chinese Academy of Sciences, Shandong First Medical University.
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                Author and article information

                Contributors
                jingyuanfang@sjtu.edu.cn
                Journal
                J Dig Dis
                J Dig Dis
                10.1111/(ISSN)1751-2980
                CDD
                Journal of Digestive Diseases
                Wiley Publishing Asia Pty Ltd (Melbourne )
                1751-2972
                1751-2980
                10 March 2020
                March 2020
                : 21
                : 3 ( doiID: 10.1111/cdd.v21.3 )
                : 125-126
                Affiliations
                [ 1 ] Division of Gastroenterology and Hepatology Key Laboratory of Gastroenterology & Hepatology, Ministry of Health, State Key Laboratory of Oncogene and Related Genes, Shanghai Institute of Digestive Disease, Renji Hospital, School of Medicine, Shanghai Jiao Tong University Shanghai China
                Author notes
                [*] [* ] Correspondence

                Jing Yuan Fang, Division of Gastroenterology and Hepatology, Key Laboratory of Gastroenterology & Hepatology, Ministry of Health, State Key Laboratory of Oncogene and Related Genes, Shanghai Institute of Digestive Disease, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, 145 Middle Shandong Road, Shanghai 200001, China. Email: jingyuanfang@ 123456sjtu.edu.cn

                Author information
                https://orcid.org/0000-0001-9422-300X
                https://orcid.org/0000-0002-1883-7736
                https://orcid.org/0000-0003-2282-0248
                Article
                CDD12851
                10.1111/1751-2980.12851
                7162053
                32096611
                69fa08ea-ada4-4d3c-8e70-61e3e8c51bee
                © 2020 Chinese Medical Association Shanghai Branch, Chinese Society of Gastroenterology, Renji Hospital Affiliated to Shanghai Jiaotong University School of Medicine and John Wiley & Sons Australia, Ltd

                This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response. It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.

                History
                : 20 February 2020
                : 20 February 2020
                Page count
                Figures: 0, Tables: 0, Pages: 2, Words: 1304
                Categories
                Editorial
                Editorial
                Custom metadata
                2.0
                March 2020
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.8.0 mode:remove_FC converted:15.04.2020

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