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      Didymium arenosum, a myxomycete new to science from the confluence of deserts in northwestern China

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          Abstract

          A new myxomycete species, Didymium arenosum, was described based on morphological evidence and phylogenetic analyses. The species was discovered in the arid region at the confluence of the Badain Jaran desert and Tengger desert on the leaves of Betula platyphylla and was cultivated in a moist chamber culture. Morphologically, the species is distinguished by the greenish-yellow calcium carbonate crystals on the surface and the spores covered with small warts, some of which are connected into a short line. A phylogenetic analysis of D. arenosum strongly supports its classification as a separate clade. The spore to spore agar culture of D. arenosum requires 23 days, and this study provides a detailed description of its life cycle.

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          MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

          We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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            MrBayes 3: Bayesian phylogenetic inference under mixed models.

            MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types-e.g. morphological, nucleotide, and protein-and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
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              BioEdit - a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT

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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                peerj
                PeerJ
                PeerJ Inc. (San Diego, USA )
                2167-8359
                8 January 2024
                2024
                : 12
                : e16725
                Affiliations
                [1 ]Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University , Changchun, Jilin, China
                [2 ]College of Plant Protection, Jilin Agricultural University , Changchun, Jilin, China
                [3 ]Northeast Normal University , Changchun, Jilin, China
                Article
                16725
                10.7717/peerj.16725
                10782953
                38213774
                19b48ed4-fc40-4f21-9343-725a5dd7d23c
                ©2024 Wei et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 25 May 2023
                : 5 December 2023
                Funding
                Funded by: National Key R&D Program of China
                Award ID: 2021YFD1600401
                Funded by: Science and Technology Development Project of Jilin Province
                Award ID: 20190201197JC
                Funded by: National Natural Science Foundation of China
                Award ID: No. 31770011
                This work was supported by the National Key R&D Program of China (2021YFD1600401); Science and Technology Development Project of Jilin Province (20190201197JC); and the National Natural Science Foundation of China (No. 31770011). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Biodiversity
                Microbiology
                Molecular Biology
                Mycology

                didymium,morphology,phylogeny,scanning electron microscope,ssu rdna,the life cycle

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