14
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Fungi in the Marine Environment: Open Questions and Unsolved Problems

      review-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Terrestrial fungi play critical roles in nutrient cycling and food webs and can shape macroorganism communities as parasites and mutualists. Although estimates for the number of fungal species on the planet range from 1.5 to over 5 million, likely fewer than 10% of fungi have been identified so far.

          ABSTRACT

          Terrestrial fungi play critical roles in nutrient cycling and food webs and can shape macroorganism communities as parasites and mutualists. Although estimates for the number of fungal species on the planet range from 1.5 to over 5 million, likely fewer than 10% of fungi have been identified so far. To date, a relatively small percentage of described species are associated with marine environments, with ∼1,100 species retrieved exclusively from the marine environment. Nevertheless, fungi have been found in nearly every marine habitat explored, from the surface of the ocean to kilometers below ocean sediments. Fungi are hypothesized to contribute to phytoplankton population cycles and the biological carbon pump and are active in the chemistry of marine sediments. Many fungi have been identified as commensals or pathogens of marine animals (e.g., corals and sponges), plants, and algae. Despite their varied roles, remarkably little is known about the diversity of this major branch of eukaryotic life in marine ecosystems or their ecological functions. This perspective emerges from a Marine Fungi Workshop held in May 2018 at the Marine Biological Laboratory in Woods Hole, MA. We present the state of knowledge as well as the multitude of open questions regarding the diversity and function of fungi in the marine biosphere and geochemical cycles.

          Related collections

          Most cited references81

          • Record: found
          • Abstract: found
          • Article: not found

          Structure and function of the global topsoil microbiome

          Soils harbour some of the most diverse microbiomes on Earth and are essential for both nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model the global distribution patterns and functional gene repertoires of soil microorganisms, as well as the biotic and environmental associations between the diversity and structure of both bacterial and fungal soil communities1-4. Here we show, by leveraging metagenomics and metabarcoding of global topsoil samples (189 sites, 7,560 subsamples), that bacterial, but not fungal, genetic diversity is highest in temperate habitats and that microbial gene composition varies more strongly with environmental variables than with geographic distance. We demonstrate that fungi and bacteria show global niche differentiation that is associated with contrasting diversity responses to precipitation and soil pH. Furthermore, we provide evidence for strong bacterial-fungal antagonism, inferred from antibiotic-resistance genes, in topsoil and ocean habitats, indicating the substantial role of biotic interactions in shaping microbial communities. Our results suggest that both competition and environmental filtering affect the abundance, composition and encoded gene functions of bacterial and fungal communities, indicating that the relative contributions of these microorganisms to global nutrient cycling varies spatially.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Environmental science. Rethinking the marine carbon cycle: factoring in the multifarious lifestyles of microbes.

            The profound influence of marine plankton on the global carbon cycle has been recognized for decades, particularly for photosynthetic microbes that form the base of ocean food chains. However, a comprehensive model of the carbon cycle is challenged by unicellular eukaryotes (protists) having evolved complex behavioral strategies and organismal interactions that extend far beyond photosynthetic lifestyles. As is also true for multicellular eukaryotes, these strategies and their associated physiological changes are difficult to deduce from genome sequences or gene repertoires—a problem compounded by numerous unknown function proteins. Here, we explore protistan trophic modes in marine food webs and broader biogeochemical influences. We also evaluate approaches that could resolve their activities, link them to biotic and abiotic factors, and integrate them into an ecosystems biology framework.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Biodegradation of polyethylene microplastics by the marine fungus Zalerion maritimum.

              Plastic yearly production has surpassed the 300milliontons mark and recycling has all but failed in constituting a viable solution for the disposal of plastic waste. As these materials continue to accumulate in the environment, namely, in rivers and oceans, in the form of macro-, meso-, micro- and nanoplastics, it becomes of the utmost urgency to find new ways to curtail this environmental threat. Multiple efforts have been made to identify and isolate microorganisms capable of utilizing synthetic polymers and recent results point towards the viability of a solution for this problem based on the biodegradation of plastics resorting to selected microbial strains. Herein, the response of the fungus Zalerion maritimum to different times of exposition to polyethylene (PE) pellets, in a minimum growth medium, was evaluated, based on the quantified mass differences in both the fungus and the microplastic pellets used. Additionally, molecular changes were assessed through attenuated total reflectance Fourier transform Infrared Spectroscopy (FTIR-ATR) and Nuclear Magnetic Resonance (NMR). Results showed that, under the tested conditions, Z. maritimum is capable of utilizing PE, resulting in the decrease, in both mass and size, of the pellets. These results indicate that this naturally occurring fungus may actively contribute to the biodegradation of microplastics, requiring minimum nutrients.
                Bookmark

                Author and article information

                Contributors
                Role: Editor
                Journal
                mBio
                MBio
                mbio
                mbio
                mBio
                mBio
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2150-7511
                5 March 2019
                Mar-Apr 2019
                : 10
                : 2
                : e01189-18
                Affiliations
                [a ]Department of Botany, University of Hawai’i at Manoa, Honolulu, Hawaii, USA
                [b ]Université de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, ESIAB, Technopôle Brest-Iroise, Plouzané, France
                [c ]Marine Biological Association of the United Kingdom, The Laboratory, Citadel Hill, Plymouth, United Kingdom
                [d ]Department of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
                [e ]Genome Center, University of California, Davis, California, USA
                [f ]Departamento de Oceanografía, Centro de Investigación Oceanográfica COPAS Sur-Austral, Universidad de Concepción, Concepción, Chile
                [g ]Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, USA
                [h ]Department of Biology, University of Mississippi, Oxford, Mississippi, USA
                [i ]Gordon and Betty Moore Foundation, Palo Alto, California, USA
                [j ]Graduate School of Environment and Information Sciences, Yokohama National University, Yokohama, Japan
                [k ]Department of Botany, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
                [l ]Ecology and Evolutionary Biology Department, University of Colorado, Boulder, Colorado, USA
                [m ]National Institute of Oceanography, Goa, India
                [n ]Department of Microbiology, Centro de Investigación Científica y Educación Superior de Ensenada (CICESE), Ensenada, Baja California, Mexico
                [o ]Department of Microbiology & Plant Pathology and Institute for Integrative Genome Biology, University of California-Riverside, Riverside, California, USA
                [p ]Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
                [q ]Department of Biology, Acadia University, Wolfville, Nova Scotia, Canada
                [r ]Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
                [s ]Marine Biological Laboratory, Woods Hole, Massachusetts, USA
                University of Texas Health Science Center at Houston
                Author notes
                Address correspondence to Amy S. Gladfelter, amyglad@ 123456unc.edu .
                Author information
                https://orcid.org/0000-0001-7334-403X
                https://orcid.org/0000-0002-2580-326X
                https://orcid.org/0000-0002-7591-0020
                https://orcid.org/0000-0002-5061-361X
                Article
                mBio01189-18
                10.1128/mBio.01189-18
                6401481
                30837337
                0e392a15-5106-4822-8db5-01948fa05123
                Copyright © 2019 Amend et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Page count
                Figures: 3, Tables: 0, Equations: 0, References: 119, Pages: 15, Words: 10389
                Categories
                Minireview
                Ecological and Evolutionary Science
                Custom metadata
                March/April 2019

                Life sciences
                mycology,chytrid,marine fungi,marine microbiology
                Life sciences
                mycology, chytrid, marine fungi, marine microbiology

                Comments

                Comment on this article