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      Increased Detection of Carbapenemase-Producing Enterobacterales Bacteria in Latin America and the Caribbean during the COVID-19 Pandemic

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      , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,
      Emerging Infectious Diseases
      Centers for Disease Control and Prevention
      COVID-19, respiratory infections, severe acute respiratory syndrome coronavirus 2, SARS-CoV-2, SARS, coronavirus disease, zoonoses, viruses, coronavirus, antimicrobial resistance, bacteria, carbapenemase-producing Enterobacterales, enteric infections, food safety, Latin America, the Caribbean, Suggested citation for this article: Romero Thomas G, Corso A, Pasterán F, Shal J, Sosa A, Pillonetto M, et al. Increased detection of carbapenemase-producing Enterobacterales bacteria in Latin America and the Caribbean during the COVID-19 pandemic. Emerg Infect Dis. 2022 Nov [date cited]. https://doi.org/10.3201/eid2811.220415

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          Abstract

          During 2020–2021, countries in Latin America and the Caribbean reported clinical emergence of carbapenemase-producing Enterobacterales that had not been previously characterized locally, increased prevalence of carbapenemases that had previously been detected, and co-production of multiple carbapenemases in some isolates. These increases were likely fueled by changes related to the COVID-19 pandemic, including empirical antibiotic use for potential COVID-19–related bacterial infections and healthcare limitations resulting from the rapid rise in COVID-19 cases. Strengthening antimicrobial resistance surveillance, epidemiologic research, and infection prevention and control programs and antimicrobial stewardship in clinical settings can help prevent emergence and transmission of carbapenemase-producing Enterobacterales.

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          Most cited references39

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          Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis

          (2022)
          Summary Background Antimicrobial resistance (AMR) poses a major threat to human health around the world. Previous publications have estimated the effect of AMR on incidence, deaths, hospital length of stay, and health-care costs for specific pathogen–drug combinations in select locations. To our knowledge, this study presents the most comprehensive estimates of AMR burden to date. Methods We estimated deaths and disability-adjusted life-years (DALYs) attributable to and associated with bacterial AMR for 23 pathogens and 88 pathogen–drug combinations in 204 countries and territories in 2019. We obtained data from systematic literature reviews, hospital systems, surveillance systems, and other sources, covering 471 million individual records or isolates and 7585 study-location-years. We used predictive statistical modelling to produce estimates of AMR burden for all locations, including for locations with no data. Our approach can be divided into five broad components: number of deaths where infection played a role, proportion of infectious deaths attributable to a given infectious syndrome, proportion of infectious syndrome deaths attributable to a given pathogen, the percentage of a given pathogen resistant to an antibiotic of interest, and the excess risk of death or duration of an infection associated with this resistance. Using these components, we estimated disease burden based on two counterfactuals: deaths attributable to AMR (based on an alternative scenario in which all drug-resistant infections were replaced by drug-susceptible infections), and deaths associated with AMR (based on an alternative scenario in which all drug-resistant infections were replaced by no infection). We generated 95% uncertainty intervals (UIs) for final estimates as the 25th and 975th ordered values across 1000 posterior draws, and models were cross-validated for out-of-sample predictive validity. We present final estimates aggregated to the global and regional level. Findings On the basis of our predictive statistical models, there were an estimated 4·95 million (3·62–6·57) deaths associated with bacterial AMR in 2019, including 1·27 million (95% UI 0·911–1·71) deaths attributable to bacterial AMR. At the regional level, we estimated the all-age death rate attributable to resistance to be highest in western sub-Saharan Africa, at 27·3 deaths per 100 000 (20·9–35·3), and lowest in Australasia, at 6·5 deaths (4·3–9·4) per 100 000. Lower respiratory infections accounted for more than 1·5 million deaths associated with resistance in 2019, making it the most burdensome infectious syndrome. The six leading pathogens for deaths associated with resistance (Escherichia coli, followed by Staphylococcus aureus, Klebsiella pneumoniae, Streptococcus pneumoniae, Acinetobacter baumannii, and Pseudomonas aeruginosa) were responsible for 929 000 (660 000–1 270 000) deaths attributable to AMR and 3·57 million (2·62–4·78) deaths associated with AMR in 2019. One pathogen–drug combination, meticillin-resistant S aureus, caused more than 100 000 deaths attributable to AMR in 2019, while six more each caused 50 000–100 000 deaths: multidrug-resistant excluding extensively drug-resistant tuberculosis, third-generation cephalosporin-resistant E coli, carbapenem-resistant A baumannii, fluoroquinolone-resistant E coli, carbapenem-resistant K pneumoniae, and third-generation cephalosporin-resistant K pneumoniae. Interpretation To our knowledge, this study provides the first comprehensive assessment of the global burden of AMR, as well as an evaluation of the availability of data. AMR is a leading cause of death around the world, with the highest burdens in low-resource settings. Understanding the burden of AMR and the leading pathogen–drug combinations contributing to it is crucial to making informed and location-specific policy decisions, particularly about infection prevention and control programmes, access to essential antibiotics, and research and development of new vaccines and antibiotics. There are serious data gaps in many low-income settings, emphasising the need to expand microbiology laboratory capacity and data collection systems to improve our understanding of this important human health threat. Funding Bill & Melinda Gates Foundation, Wellcome Trust, and Department of Health and Social Care using UK aid funding managed by the Fleming Fund.
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            Bacterial and fungal co-infection in individuals with coronavirus: A rapid review to support COVID-19 antimicrobial prescribing

            Abstract Background To explore and describe the current literature surrounding bacterial/fungal co-infection in patients with coronavirus infection. Methods MEDLINE, EMBASE, and Web of Science were searched using broad based search criteria relating to coronavirus and bacterial co-infection. Articles presenting clinical data for patients with coronavirus infection (defined as SARS-1, MERS, SARS-COV-2, and other coronavirus) and bacterial/fungal co-infection reported in English, Mandarin, or Italian were included. Data describing bacterial/fungal co-infections, treatments, and outcomes were extracted. Secondary analysis of studies reporting antimicrobial prescribing in SARS-COV-2 even in the absence of co-infection was performed. Results 1007 abstracts were identified. Eighteen full texts reported bacterial/fungal co-infection were included. Most studies did not identify or report bacterial/fungal coinfection (85/140;61%). 9/18 (50%) studies reported on COVID-19, 5/18 (28%) SARS-1, 1/18 (6%) MERS, and 3/18 (17%) other coronavirus. For COVID-19, 62/806 (8%) patients were reported as experiencing bacterial/fungal co-infection during hospital admission. Secondary analysis demonstrated wide use of broad-spectrum antibacterials, despite a paucity of evidence for bacterial coinfection. On secondary analysis, 1450/2010 (72%) of patients reported received antimicrobial therapy. No antimicrobial stewardship interventions were described. For non-COVID-19 cases bacterial/fungal co-infection was reported in 89/815 (11%) of patients. Broad-spectrum antibiotic use was reported. Conclusions Despite frequent prescription of broad-spectrum empirical antimicrobials in patients with coronavirus associated respiratory infections, there is a paucity of data to support the association with respiratory bacterial/fungal co-infection. Generation of prospective evidence to support development of antimicrobial policy and appropriate stewardship interventions specific for the COVID-19 pandemic are urgently required.
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              Carbapenemases: the versatile beta-lactamases.

              Carbapenemases are beta-lactamases with versatile hydrolytic capacities. They have the ability to hydrolyze penicillins, cephalosporins, monobactams, and carbapenems. Bacteria producing these beta-lactamases may cause serious infections in which the carbapenemase activity renders many beta-lactams ineffective. Carbapenemases are members of the molecular class A, B, and D beta-lactamases. Class A and D enzymes have a serine-based hydrolytic mechanism, while class B enzymes are metallo-beta-lactamases that contain zinc in the active site. The class A carbapenemase group includes members of the SME, IMI, NMC, GES, and KPC families. Of these, the KPC carbapenemases are the most prevalent, found mostly on plasmids in Klebsiella pneumoniae. The class D carbapenemases consist of OXA-type beta-lactamases frequently detected in Acinetobacter baumannii. The metallo-beta-lactamases belong to the IMP, VIM, SPM, GIM, and SIM families and have been detected primarily in Pseudomonas aeruginosa; however, there are increasing numbers of reports worldwide of this group of beta-lactamases in the Enterobacteriaceae. This review updates the characteristics, epidemiology, and detection of the carbapenemases found in pathogenic bacteria.
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                Author and article information

                Journal
                Emerg Infect Dis
                Emerg Infect Dis
                EID
                Emerging Infectious Diseases
                Centers for Disease Control and Prevention
                1080-6040
                1080-6059
                November 2022
                : 28
                : 11
                : e220415
                Affiliations
                [1]Pan American Health Organization, Washington, DC, USA (G. Romero Thomas, R. Quiroz, N. El-Omeiri, M.F. Galas, P. Ramón-Pardo, R.G. Melano);
                [2]Instituto Nacional de Enfermedades Infecciosas–ANLIS “Dr. C.G. Malbrán,” Argentina (A. Corso, F. Pasterán);
                [3]Central Medical Laboratory, Belize City, Belize (J. Shal, A. Sosa);
                [4]Laboratório Centrais de Saúde Pública do Paraná, Curitiba-PR, Brazil (M. Pillonetto);
                [5]General Coordination of Public Health Laboratories, Brasilia-DF, Brazil (R. Tigulini de Souza Peral);
                [6]Instituto de Salud Pública, Santiago, Chile (J.C. Hormazábal, P. Araya);
                [7]Instituto Nacional de Salud, Bogotá, Colombia (S.Y. Saavedra, M.V. Ovalle);
                [8]Instituto Costarricense de Investigación y Enseñanza en Nutrición y Salud, Cartago, Costa Rica (M.A. Jiménez Pearson, G. Chanto Chacón);
                [9]Princess Margaret Hospital/Dominica-China Friendship Hospital Laboratory, Roseau, Dominica (E. Carbon);
                [10]Laboratorio Nacional de Salud, Bárcena, Guatemala (C.J. Mazariegos Herrera);
                [11]Unidad Central de Referencia Vigilancia Epidemiológica, Bárcena (S.C. González Velásquez);
                [12]Instituto Nacional de Investigación en Salud Pública, Quito, Ecuador (C. Satán-Salazar, F. Villavicencio);
                [13]Laboratorio Central de Salud Pública, Asunción, Paraguay (N. Melgarejo Touchet, S. Busignani);
                [14]Instituto Nacional de Salud, Lima, Peru (M. Mayta-Barrios, J. Ramírez-Illescas);
                [15]Departamento de Laboratorios de Salud Pública, Montevideo, Uruguay (M. López Vega, C. Mogdasy);
                [16]Instituto Nacional de Higiene “Rafael Rangel”, Caracas, Venezuela (V. Rosas, N. Salgado);
                [17]Public Health Ontario Laboratory, Toronto, Ontario, Canada (R.G. Melano)
                Author notes
                Address for correspondence: Roberto G. Melano, Pan American Health Organization, 525 23rd St NW, Washington, DC 20037, USA; email: melanorob@ 123456paho.org
                Article
                22-0415
                10.3201/eid2811.220415
                9622262
                36286547
                f7924bc9-1d87-45a0-be8a-87e2e6336703
                Copyright @ 2022

                Emerging Infectious Diseases is a publication of the U.S. Government. This publication is in the public domain and is therefore without copyright. All text from this work may be reprinted freely. Use of these materials should be properly cited.

                History
                Categories
                Online Report
                Online Report
                Increased Detection of Carbapenemase-Producing Enterobacterales Bacteria in Latin America and the Caribbean during the COVID-19 Pandemic

                Infectious disease & Microbiology
                covid-19,respiratory infections,severe acute respiratory syndrome coronavirus 2,sars-cov-2,sars,coronavirus disease,zoonoses,viruses,coronavirus,antimicrobial resistance,bacteria,carbapenemase-producing enterobacterales,enteric infections,food safety,latin america,the caribbean,suggested citation for this article: romero thomas g,corso a,pasterán f,shal j,sosa a,pillonetto m,et al. increased detection of carbapenemase-producing enterobacterales bacteria in latin america and the caribbean during the covid-19 pandemic. emerg infect dis. 2022 nov [date cited]. https://doi.org/10.3201/eid2811.220415

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