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      Self-Driven Jamming in Growing Microbial Populations

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          Abstract

          In natural settings, microbes tend to grow in dense populations [ 14] where they need to push against their surroundings to accommodate space for new cells. The associated contact forces play a critical role in a variety of population-level processes, including biofilm formation [ 57], the colonization of porous media [ 8, 9], and the invasion of biological tissues [ 1012]. Although mechanical forces have been characterized at the single cell level [ 1316], it remains elusive how collective pushing forces result from the combination of single cell forces. Here, we reveal a collective mechanism of confinement, which we call self-driven jamming, that promotes the build-up of large mechanical pressures in microbial populations. Microfluidic experiments on budding yeast populations in space-limited environments show that self-driven jamming arises from the gradual formation and sudden collapse of force chains driven by microbial proliferation, extending the framework of driven granular matter [ 1720]. The resulting contact pressures can become large enough to slow down cell growth, to delay the cell cycle in the G1 phase, and to strain or even destroy the microenvironment through crack propagation. Our results suggest that self-driven jamming and build-up of large mechanical pressures is a natural tendency of microbes growing in confined spaces, contributing to microbial pathogenesis and biofouling [ 2126].

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          Most cited references56

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          Microbial diversity and function in soil: from genes to ecosystems.

          Soils sustain an immense diversity of microbes, which, to a large extent, remains unexplored. A range of novel methods, most of which are based on rRNA and rDNA analyses, have uncovered part of the soil microbial diversity. The next step in the era of microbial ecology is to extract genomic, evolutionary and functional information from bacterial artificial chromosome libraries of the soil community genomes (the metagenome). Sophisticated analyses that apply molecular phylogenetics, DNA microarrays, functional genomics and in situ activity measurements will provide huge amounts of new data, potentially increasing our understanding of the structure and function of soil microbial ecosystems, and the interactions that occur within them. This review summarizes the recent progress in studies of soil microbial communities with focus on novel methods and approaches that provide new insight into the relationship between phylogenetic and functional diversity.
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            On dense granular flows

            GdR Midi (2003)
            The behaviour of dense assemblies of dry grains submitted to continuous shear deformation has been the subject of many experiments and discrete particle simulations. This paper is a collective work carried out among the French research group GDR Milieux Divis\'es. It proceeds from the collection of results on steady uniform granular flows obtained by different groups in six different geometries both in experiments and numerical works. The goal is to achieve a coherent presentation of the relevant quantities to be measured i.e. flowing thresholds, kinematic profiles, effective friction, etc. First, a quantitative comparison between data coming from different experiments in the same geometry enforces the robust features in each case. Second, a transversal analysis of the data across the different configurations, allows us to identify the relevant dimensionless parameters, the different flow regimes and to propose simple interpretations. The present work, more than a simple juxtaposition of results, underlines the richness of granular flows and enhances the open problem of defining a single rheology
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              Candida biofilms and their role in infection.

              L. Douglas (2003)
              Pathogenic fungi in the genus Candida can cause both superficial and serious systemic disease, and are now recognized as major agents of hospital-acquired infection. Many Candida infections involve the formation of biofilms on implanted devices such as indwelling catheters or prosthetic heart valves. Biofilms of Candida albicans formed in vitro on catheter material consist of matrix-enclosed microcolonies of yeasts and hyphae, arranged in a bilayer structure. The biofilms are resistant to a range of antifungal agents currently in clinical use, including amphotericin B and fluconazole, and there appear to be multiple resistance mechanisms. Recent studies with mixed biofilms containing Candida and bacterial species suggest that extensive and striking interactions occur between the prokaryotic and eukaryotic cells in these adherent populations.
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                Author and article information

                Journal
                101235387
                34285
                Nat Phys
                Nat Phys
                Nature physics
                1745-2473
                25 April 2016
                9 May 2016
                August 2016
                01 February 2017
                : 12
                : 8
                : 762-766
                Affiliations
                [1 ]Departments of Physics and Integrative Biology, University of California Berkeley, USA
                [2 ]Max Planck Institute for Dynamics and Self-Organization Göttingen, Germany
                [3 ]Biophysics Graduate Group, University of California Berkeley, USA
                [4 ]Department of Bioengineering, University of California Berkeley, USA
                Author notes
                [†]

                MD and JH equally contributed to this work.

                Article
                NIHMS772138
                10.1038/nphys3741
                5022770
                27642362
                ee61cdef-bd6a-4703-8ff4-3a83f32de33d

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                Physics
                Physics

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