Sadia Isfat Ara Rahman: Role: ConceptualizationRole: Formal analysisRole: MethodologyRole: VisualizationRole:
Writing – original draftRole: Writing – review & editing
Zoe A. Dyson:
ORCID: http://orcid.org/0000-0002-8887-3492
Role: ConceptualizationRole: Formal analysisRole: VisualizationRole: Writing – original
draftRole: Writing – review & editing
Elizabeth J. Klemm: Role: Formal analysisRole: VisualizationRole: Writing – review & editing
Farhana Khanam: Role: Data curationRole: Funding acquisitionRole: ResourcesRole: Writing – review
& editing
Kathryn E. Holt:
ORCID: http://orcid.org/0000-0003-3949-2471
Role: Formal analysisRole: Writing – review & editing
Emran Kabir Chowdhury: Role: SupervisionRole: Writing – review & editing
Gordon Dougan: Role: ConceptualizationRole: Funding acquisitionRole: SupervisionRole: Writing – original
draftRole: Writing – review & editing
Firdausi Qadri: Role: ConceptualizationRole: Funding acquisitionRole: SupervisionRole: Writing – original
draftRole: Writing – review & editing
Abiola Senok: Role: Editor
Journal ID (nlm-ta): PLoS Negl Trop Dis
Journal ID (iso-abbrev): PLoS Negl Trop Dis
Journal ID (publisher-id): plos
Journal ID (pmc): plosntds
Title:
PLoS Neglected Tropical Diseases
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1935-2727
ISSN
(Electronic):
1935-2735
Publication date
(Electronic):
27
February
2020
Publication date Collection:
February
2020
Volume: 14
Issue: 2
Electronic Location Identifier: e0008036
Affiliations
[1
]
Infectious Diseases Division, International Centre for Diarrhoeal Disease Research,
Bangladesh (icddr,b), Dhaka, Bangladesh
[2
]
Department of Medicine, University of Cambridge, Cambridge, United Kingdom
[3
]
Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne,
Victoria, Australia
[4
]
Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom
[5
]
Department of Infection Biology, Faculty of Infections and Tropical Diseases, London
School of Hygiene and Tropical Medicine, London, United Kingdom
[6
]
Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, Bangladesh
Mohammed Bin Rashid University of Medicine and Health Sciences, UNITED ARAB EMIRATES
Author notes
The authors have declared that no competing interests exist.
‡ These authors are joint senior authors on this work.
Author information
Article
Publisher ID:
PNTD-D-19-01039
DOI: 10.1371/journal.pntd.0008036
PMC ID: 7064254
PubMed ID: 32106221
SO-VID: ecd59d27-930e-407a-a20d-ea8b791291be
Copyright © © 2020 Rahman et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by: funder-id http://dx.doi.org/10.13039/100004440, Wellcome Trust;
Award ID: 106158/Z/14/Z
Award Recipient
:
Gordon Dougan
Funded by: National Institute of Allergy and Infectious Diseases
Award ID: AI100023,AI058935
Award Recipient
:
Firdausi Qadri
Funded by: Fogarty International Center Training Grant in Vaccine Development and Public Health
Award ID: TW005572
Award Recipient
:
Firdausi Qadri
Funded by: funder-id http://dx.doi.org/10.13039/100000865, Bill and Melinda Gates Foundation;
Award ID: OPP50419
Funded by: SIDA
Award ID: 54100020, 51060029
Funded by: funder-id http://dx.doi.org/10.13039/100004440, Wellcome Trust;
Award ID: 098051
Award Recipient
:
Sadia Isfat Ara Rahman
Funded by: funder-id http://dx.doi.org/10.13039/100000865, Bill and Melinda Gates Foundation;
Award ID: OPP1151153
Award Recipient
:
Sadia Isfat Ara Rahman
This work was supported by the Wellcome Trust Sanger Institute, Cambridge, UK and
International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b) as well
as the Cambridge BRC AMR Theme (NIHR). This study was supported by the grants from
the Wellcome Trust, the National Institutes of Health, including the National Institute
of Allergy and Infectious Diseases (
niaid.nih.gov, AI100023 [FQ]); AI058935 [FQ]) as well as a Fogarty International Center Training
Grant in Vaccine Development and Public Health (
fic.nih.gov, TW005572 [FK and FQ]), Bill and Melinda Gates Foundation (
gatesfoundation.org, Grant no. OPP50419) and also SIDA fund (sida.se, 54100020, 51060029). icddr,b is
grateful to the Governments of Bangladesh, Canada, Sweden and UK for providing core
support. ZAD was supported by a grant funded by the Wellcome Trust (
wellcome.ac.uk, 106158/Z/14/Z). KEH is supported by a Senior Medical Research Fellowship from the
Viertel Foundation of Australia (
viertel.org.au). This work was also supported by The Wellcome Trust (STRATAA) [106158 and 098051],
the Gates Foundation (TyVAC) [OPP1151153]. The funders had no role in study design,
data collection and analysis, decision to publish, or preparation of the manuscript.
Subject:
Research Article
Subject:
Medicine and Health Sciences
Subject:
Infectious Diseases
Subject:
Bacterial Diseases
Subject:
Salmonella
Subject:
Salmonella Typhi
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Medical Microbiology
Subject:
Microbial Pathogens
Subject:
Bacterial Pathogens
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Salmonella
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Salmonella Typhi
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Medicine and Health Sciences
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Pathology and Laboratory Medicine
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Pathogens
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Microbial Pathogens
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Bacterial Pathogens
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Salmonella
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Salmonella Typhi
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Biology and Life Sciences
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Organisms
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Bacteria
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Enterobacteriaceae
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Salmonella
Subject:
Salmonella Typhi
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Microbial Control
Subject:
Antimicrobial Resistance
Subject:
Medicine and Health Sciences
Subject:
Pharmacology
Subject:
Antimicrobial Resistance
Subject:
People and Places
Subject:
Geographical Locations
Subject:
Asia
Subject:
Bangladesh
Subject:
Medicine and Health Sciences
Subject:
Infectious Diseases
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Bacterial Diseases
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Typhoid
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Biology and Life Sciences
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Evolutionary Biology
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Evolutionary Systematics
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Phylogenetics
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Biology and Life Sciences
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Taxonomy
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Evolutionary Systematics
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Phylogenetics
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Computer and Information Sciences
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Data Management
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Taxonomy
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Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Sequence Assembly Tools
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
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Sequence Assembly Tools
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Molecular Genetics
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Genetics
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Computer and Information Sciences
Subject:
Data Management
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis