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      Prediction of outcome in newly diagnosed myeloma: a meta-analysis of the molecular profiles of 1,905 trial patients

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          Abstract

          Robust establishment of survival in multiple myeloma (MM) and its relationship to recurrent genetic aberrations is required as outcomes are variable despite apparent similar staging. We assayed copy number alterations (CNA) and translocations in 1,036 patients from the NCRI Myeloma XI trial and linked these to overall survival (OS) and progression-free survival. Through a meta-anlysis of these data with data from MRC Myeloma IX trial, totalling 1,905 newly diagnosed MM patients (NDMM), we confirm the association of t(4;14), t(14;16), t(14;20), del(17p) and gain(1q21) with poor prognosis with hazard ratios (HRs) for OS of 1.60 ( P=4.77x10 -7), 1.74 ( P=0.0005), 1.90 ( P=0.0089), 2.10 ( P=8.86x10 -14) and 1.68 ( P=2.18x10 -14), respectively. Patients with ‘double-hit’ defined by co-occurrence of at least two adverse lesions have an especially poor prognosis with HRs for OS of 2.67 ( P=8.13x10 -27) for all patients and 3.19 ( P=1.23x10 -18) for intensively treated patients. Using comprehensive CNA and translocation profiling in Myeloma XI we also demonstrate a strong association between t(4;14) and BIRC2/BIRC3 deletion ( P=8.7x10 -15), including homozygous deletion. Finally, we define distinct sub-groups of hyperdiploid MM, with either gain(1q21) and CCND2 overexpression ( P<0.0001) or gain(11q25) and CCND1 overexpression ( P<0.0001). Profiling multiple genetic lesions can identify MM patients likely to relapse early allowing stratification of treatment.

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          Most cited references27

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          R: a language and environment for statistical computing

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            Cyclin D dysregulation: an early and unifying pathogenic event in multiple myeloma.

            Two oncogenic pathways have been hypothesized for multiple myeloma (MM) and premalignant monoclonal gammopathy of undetermined significance (MGUS) tumors: a nonhyperdiploid pathway associated with a high prevalence of IgH translocations and a hyperdiploid pathway associated with multiple trisomies of 8 chromosomes. Cyclin D1, D2, or D3 expression appears to be increased and/or dysregulated in virtually all MM tumors despite their low proliferative capacity. Translocations can directly dysregulate CCND1 (11q13) or CCND3 (6p21), or MAF (16q23) or MAFB (20q11) transcription factors that target CCND2. Biallelic dysregulation of CCND1 occurs in nearly 40% of tumors, most of which are hyperdiploid. Other tumors express increased CCND2, either with or without a t(4;14) translocation. Using gene expression profiling to identify 5 recurrent translocations, specific trisomies, and expression of cyclin D genes, MM tumors can be divided into 8 TC (translocation/cyclin D) groups (11q13, 6p21, 4p16, maf, D1, D1+D2, D2, and none) that appear to be defined by early, and perhaps initiating, oncogenic events. However, despite subsequent progression events, these groups have differing gene expression profiles and also significant differences in the prevalence of bone disease, frequency at relapse, and progression to extramedullary tumor.
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              A compendium of myeloma-associated chromosomal copy number abnormalities and their prognostic value.

              To obtain a comprehensive genomic profile of presenting multiple myeloma cases we performed high-resolution single nucleotide polymorphism mapping array analysis in 114 samples alongside 258 samples analyzed by U133 Plus 2.0 expression array (Affymetrix). We examined DNA copy number alterations and loss of heterozygosity (LOH) to define the spectrum of minimally deleted regions in which relevant genes of interest can be found. The most frequent deletions are located at 1p (30%), 6q (33%), 8p (25%), 12p (15%), 13q (59%), 14q (39%), 16q (35%), 17p (7%), 20 (12%), and 22 (18%). In addition, copy number-neutral LOH, or uniparental disomy, was also prevalent on 1q (8%), 16q (9%), and X (20%), and was associated with regions of gain and loss. Based on fluorescence in situ hybridization and expression quartile analysis, genes of prognostic importance were found to be located at 1p (FAF1, CDKN2C), 1q (ANP32E), and 17p (TP53). In addition, we identified common homozygously deleted genes that have functions relevant to myeloma biology. Taken together, these analyses indicate that the crucial pathways in myeloma pathogenesis include the nuclear factor-κB pathway, apoptosis, cell-cycle regulation, Wnt signaling, and histone modifications. This study was registered at http://isrctn.org as ISRCTN68454111.
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                Author and article information

                Contributors
                On behalf of : on behalf of the NCRI Haemato-oncology CSG
                Journal
                8704895
                5536
                Leukemia
                Leukemia
                Leukemia
                0887-6924
                1476-5551
                2 June 2017
                06 June 2017
                06 December 2017
                : 10.1038/leu.2017.179
                Affiliations
                [1 ]Division of Molecular Pathology, The Institute of Cancer Research, London, UK
                [2 ]MIRT, University of Arkansas for Medical Sciences, Arkansas, USA
                [3 ]Department of Haematology, Hopital Huriez, CHRU, Lille, France
                [4 ]MRC Holland, Amsterdam, The Netherlands
                [5 ]Department of Haematology, University Hospital Southampton, Southampton, UK
                [6 ]Clinical Immunology, School of Immunity & Infection, University of Birmingham, Birmingham, UK
                [7 ]Department of Haematology, St James’s University Hospital, Leeds, UK
                [8 ]Clinical Trials Research Unit, University of Leeds, Leeds, UK
                [9 ]Section of Experimental Haematology, Leeds Institute of Cancer & Pathology, University of Leeds, Leeds, United Kingdom
                [10 ]Department of Haematology, Newcastle University, Newcastle upon Tyne, UK
                Author notes
                Corresponding author: Martin Kaiser, Division of Molecular Pathology, The Institute of Cancer Research, Sutton, Surrey, SM2 5NG, United Kingdom. Telephone: +44 (0) 20 8722 4130. martin.kaiser@ 123456icr.ac.uk
                Article
                EMS72936
                10.1038/leu.2017.179
                5590713
                28584253
                e2e138bd-a975-4c37-a0c7-f6984c9945ab

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                Categories
                Article

                Oncology & Radiotherapy
                myeloma,chromosomal alterations,prognostication,oncogene and anti-oncogene function,cyclins,molecular profiling,stratified medicine

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