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      Categorical Dimensions of Human Odor Descriptor Space Revealed by Non-Negative Matrix Factorization

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      PLoS ONE
      Public Library of Science

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          Abstract

          In contrast to most other sensory modalities, the basic perceptual dimensions of olfaction remain unclear. Here, we use non-negative matrix factorization (NMF) – a dimensionality reduction technique – to uncover structure in a panel of odor profiles, with each odor defined as a point in multi-dimensional descriptor space. The properties of NMF are favorable for the analysis of such lexical and perceptual data, and lead to a high-dimensional account of odor space. We further provide evidence that odor dimensions apply categorically. That is, odor space is not occupied homogenously, but rather in a discrete and intrinsically clustered manner. We discuss the potential implications of these results for the neural coding of odors, as well as for developing classifiers on larger datasets that may be useful for predicting perceptual qualities from chemical structures.

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          Most cited references17

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          Olfactory network dynamics and the coding of multidimensional signals.

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            Predicting odor pleasantness from odorant structure: pleasantness as a reflection of the physical world.

            Although it is agreed that physicochemical features of molecules determine their perceived odor, the rules governing this relationship remain unknown. A significant obstacle to such understanding is the high dimensionality of features describing both percepts and molecules. We applied a statistical method to reduce dimensionality in both odor percepts and physicochemical descriptors for a large set of molecules. We found that the primary axis of perception was odor pleasantness, and critically, that the primary axis of physicochemical properties reflected the primary axis of olfactory perception. This allowed us to predict the pleasantness of novel molecules by their physicochemical properties alone. Olfactory perception is strongly shaped by experience and learning. However, our findings suggest that olfactory pleasantness is also partially innate, corresponding to a natural axis of maximal discriminability among biologically relevant molecules.
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              Comparative chemosensation from receptors to ecology.

              Odour perception is initiated by specific interactions between odorants and a large repertoire of receptors in olfactory neurons. During the past few years, considerable progress has been made in tracing olfactory perception from the odorant receptor protein to the activity of olfactory neurons to higher processing centres and, ultimately, to behaviour. The most complete picture is emerging for the simplest olfactory system studied--that of the fruitfly Drosophila melanogaster. Comparison of rodent, insect and nematode olfaction reveals surprising differences and unexpected similarities among chemosensory systems.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2013
                18 September 2013
                : 8
                : 9
                : e73289
                Affiliations
                [1 ]Department of Psychology, Bates College, Lewiston, Maine, United States of America
                [2 ]Program in Neuroscience, Bates College, Lewiston, Maine, United States of America
                [3 ]Computational Data Analytics Group, Computational Science and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America
                [4 ]Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
                MPI f. med. Research, Germany
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Conceived and designed the experiments: JBC AR CSC. Performed the experiments: JBC AR CSC. Analyzed the data: JBC AR CSC. Wrote the paper: JBC AR CSC.

                Article
                PONE-D-13-16894
                10.1371/journal.pone.0073289
                3776812
                24058466
                e137def2-fadd-4335-bd56-aa9cd2b16720
                Copyright @ 2013

                This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

                History
                : 26 April 2013
                : 18 July 2013
                Page count
                Pages: 16
                Funding
                CSC was partially supported by NIH GM086238. No additional external funding was received for this study. The funders had no role in study design, data collection, and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article

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