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      An emerging novel goose astrovirus associated with gosling gout disease, China

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          Abstract

          Since the first isolation from human, astroviruses have been detected in many species. Wide host range and occasional cross-transmission of astrovirus pose a risk for zoonotic infection. Here, novel astroviruses were identified from goslings with recent epidemic gout disease in China. A virus, designated as GD, was efficiently isolated from a diseased gosling using LMH cells. Genome of GD amplified using 5′ and 3′ RACE was 7183nt in full length. Sequence analysis revealed the genome of GD was <60.8% homology with others deposited in Genbank. Moreover, GD could be neutralized by goose convalescent sera, and the gout associated symptom in goslings could be reproduced by GD infection. Our data demonstrated the goose astrovirus could be one of the causative agents of the ongoing gosling gout disease in China. The identification of the goose astrovirus not only diversified the astrovirus species, but also broadened the disease patterns caused by astroviruses.

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          Astrovirus infections in humans and animals – Molecular biology, genetic diversity, and interspecies transmissions

          Astroviruses are small, non-enveloped, positive sense, single-stranded RNA viruses first identified in 1975 in children suffering from diarrhea and then described in a wide variety of animals. To date, the list of animal species susceptible to astrovirus infection has expanded to 22 animal species or families, including domestic, synantropic and wild animals, avian, and mammalian species in the terrestrial and aquatic environments. Astrovirus infections are considered among the most common cause of gastroenteritis in children, second only to rotavirus infections, but in animals their association with enteric diseases is not well documented, with the exception of turkey and mink astrovirus infection. Genetic variability has been described in almost all astrovirus species sufficiently examined infecting mammals and birds; however, antigenic variability has been demonstrated for human astroviruses but is far less investigated in animal viruses. Interestingly, there is an increasing evidence of recombination events occurring in astroviruses, which contributes to increase the genetic variability of this group of viruses. A wide variety of species infected, the evident virus genetic diversity and the occurrence of recombination events indicate or imply either cross-species transmission and subsequent virus adaptation to new hosts or the co-infection of the same host with different astroviruses. This can also favor the emergence of novel astroviruses infecting animals or with a zoonotic potential. After more than 30 years from their first description in humans, there are many exciting streams of research to be explored and intriguing questions that remain to be answered about the relatively under-studied Astroviridae family. In the present work, we will review the existing knowledge concerning astrovirus infections in humans and animals, with particular focus on the molecular biology, interspecies transmission and zoonotic potential of this group of viruses.
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            Molecular identification and characterization of novel coronaviruses infecting graylag geese (Anser anser), feral pigeons (Columbia livia) and mallards (Anas platyrhynchos).

            In light of the finding of a previously unknown coronavirus as the aetiology of the severe acute respiratory syndrome (SARS), it is probable that other coronaviruses, than those recognized to date, are circulating in animal populations. Here, the results of a screening for coronavirus are presented, using a universal coronavirus RT-PCR, of the bird species graylag goose (Anser anser), feral pigeon (Columbia livia) and mallard (Anas platyrhynchos). Coronaviruses were found in cloacal swab samples from all the three bird species. In the graylag goose, 40 of 163 sampled birds were coronavirus positive, whereas two of 100 sampled pigeons and one of five sampled mallards tested positive. The infected graylag geese showed lower body weights compared with virus-negative birds, suggesting clinical significance of the infection. Phylogenetic analyses performed on the replicase gene and nucleocapsid protein sequences, indicated that the novel coronaviruses described in the present study all branch off from group III coronaviruses. All the novel avian coronaviruses harboured the conserved s2m RNA structure in their 3' untranslated region, like other previously described group III coronaviruses, and like the SARS coronavirus. Sequencing of the complete nucleocapsid gene and downstream regions of goose and pigeon coronaviruses, evidenced the presence of two additional open reading frames for the goose coronavirus with no sequence similarity to known proteins, but with predicted transmembrane domains for one of the encoded proteins, and one additional open reading frame for the pigeon coronavirus, with a predicted transmembrane domain, downstream of the nucleocapsid gene.
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              Outbreaks of serotype 4 fowl adenovirus with novel genotype, China

              Dear Editor, Fowl adenovirus (FAdV) belongs to the genus Aviadenovirus and has been clustered into five species (A–E) with 12 serotypes. 1 Although this virus has spread globally, FAdV infection typically causes only subclinical symptoms, and severe FAdV infection is associated with inclusion body hepatitis (IBH), hydropericardium syndrome (HPS) and gizzard erosion and ulceration. 1, 2, 3, 4, 5, 6, 7, 8 Notably, severe FAdV cases with IBH and HPS in chicken flocks have been observed in China since 2013. 9 These outbreaks typically occurred in 3–5-week-old broiler flocks, as well as in 10–20-week-old layer flocks. In contrast to mild disease caused by previous FAdV outbreaks, the outbreaks of FAdV in 2015 in China caused a huge economic loss in the poultry industry. Surprisingly, to date, little is known regarding the molecular characteristics or serotypes of these potentially devastating FAdVs that remain in circulation in China. To identify which serotypes or variants of FAdV currently circulate in chicken flocks in China, we isolated FAdV from five provinces (Jiangsu, Shangdong, Anhui, Henan and Jiangxi) in 2015 for sequence analyses. For viral isolation, approximately 150 chickens with IBH or HPS were collected from the five provinces, and chicken liver homogenates were inoculated into embryonated chicken eggs. The isolates were identified as FAdV-positive by polymerase chain reaction (PCR) with primers (forward: 5′-CAA CTA CAT CGG GTT CAG GGA TAA CTT C-3′, reverse: 5′-CCA GTT TCT GTG GTG GTT GAA GGG GTT-3′), which are highly conserved in all the five species of FAdV, and specifically amplify a 766-bp fragment of the hexon gene (from position 852 to 1518 based on the hexon gene of strain ON1). The PCRs were performed with the following protocol: 94 °C for 5 min followed by 30 cycles of 94 °C for 30 s, 55 °C for 30 s, 72 °C for 30 s and 72 °C for 10 min. Next, the PCR products were sequenced by Sanger sequencing. In the end, nine FAdVs were isolated from the five provinces in 2015 and named JSCZ15, JSSQ15, JSTZ15, SD15, SDWF15, AHFY15, AHHF15, JX15 and HNLY15. Isolates JSCZ15, JSSQ15 and JSTZ15 were from Jiangsu; isolates SD15 and SDWF15 were from Shangdong; isolates AHFY15 and AHHF15 were from Anhui; and isolates JX15 and HNLY15 were from Jiangxi and Henan, respectively. Among these isolates, only JSSQ15 (11.11%) was identified as serotype 8 FAdV, while the other eight isolates (88.89%) were identified as serotype 4 FAdV. The PCR product of JSSQ15 showed 100% homology with that of serotype 8 (FAdV-E), whereas the PCR products from other eight isolates had 100% identity to that of serotype 4 (isolate ON1). This finding demonstrates that serotype 4 FAdV is epidemic in recent chicken flocks in China. To investigate the potential molecular variations in the FAdVs isolated in this study, the genomic DNA of isolates JSCZ15, SD15, SDWF15 and AHFY15 were first extracted and then sequenced as previously described. 9 Surprisingly, in comparison with the serotype 4 FAdV (JSJ13) isolated in 2013 in China, deletions with different sizes in ORF29 were found in the 2015 FAdV isolates. Sixty-six-nucleotide deletions were present in the genome of SD15, whereas 33-nt deletions were present in JSCZ15, SDWF15 and AHFY15 (Figure 1). Next, a region covering ORF29 of isolates JSCZ15, JSTZ15, AHHF15, JX15 and HNLY15, and another 2013 isolate JH2013 was amplified and sequenced. Interestingly, the 2013 isolate JH2013, similar to JSJ13, did not carry a deletion in ORF29, whereas the 2015 isolates JSCZ15, JSTZ15, JX15, HNLY15 and AHFY15 all had a 33-nt deletion in ORF29. Notably, additional whole genome sequence analyses revealed a deletion of 1961 nt from position 35413 to 37373 in four Chinese serotype 4 FAdVs compared with other serotype 4 isolates (KR-5, ON1 and MX-SHP90 from Austria, Canada and Mexico, respectively) available in NCBI. This deletion covered ORF19 (coding lipase) and ORF48 based on the sequence of the prototype serotype 4 isolate ON1. By contrast, the fiber1, fiber2 and hexon proteins associated with the antigenicity for these Chinese FAdVs showed 94.4%–94.7%, 93.3%–94.5% and 98.4%–98.6% similarity, respectively, to those from KR-5, ON1 and MX-SHP90, indicating potential antigenic variation. However, these proteins among the Chinese FAdVs had 99.8%–100% identity to each other. Our data demonstrated that serotype 4 FAdV with a novel genotype was epidemic in China. These novel Chinese serotype 4 FAdVs from chicken flocks with IBH and HPS outbreaks carry a deletion of ORF19. Another 2015 Chinese serotype 4 FAdV HB1510 isoalted by Li et al. and made available in NCBI also shows the ORF19 deletion. Although the role of this deletion is unknown, a recent study by Pedro et al. indicated that serotype 4 FAdV isolates with truncated ORF19 showed higher virulence than isolates with the full ORF19. 10 This finding suggests that Chinese serotype 4 FAdVs with deletions of ORF19 may be highly pathogenic. Our recent infection studies in chickens with isolates JSCZ15, SD15 and SDWF15 resulted in 80–100% mortality, confirming the high virulence of these FAdVs. However, the exact role of the deletion of ORF19 in these FAdVs still needs to be elucidated. Our data also revealed that 2015 Chinese serotype 4 FAdVs had 33-nt or 66-nt deletions in ORF29 in comparison with 2013 Chinese serotype 4 FAdV (Figure 1). A 33-nt deletion is also found in isolate HB1510. This finding highlighted the host adaptation of these serotype 4 FAdVs in recent chicken flocks in China. Further analysis revealed that isolates MX-SHP90 and KR-5 from other continents also carried a deletion of 33 nt in ORF29, and a 66-nt deletion was observed in isolates ON1. However, little is known regarding the roles of these deletions or host adaptation in the pathogenicity of these novel Chinese serotype 4 FAdVs. Future studies should investigate the large geographic distribution of these novel serotype 4 FAdVs, monitor their variants, identify their virulence determinants and develop efficient strategies against these novel serotype 4 FAdVs.
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                Author and article information

                Contributors
                zxy@yzu.edu.cn
                jqye@yzu.edu.cn
                Journal
                Emerg Microbes Infect
                Emerg Microbes Infect
                Emerging Microbes & Infections
                Nature Publishing Group UK (London )
                2222-1751
                5 September 2018
                5 September 2018
                2018
                : 7
                : 152
                Affiliations
                [1 ]GRID grid.268415.c, College of Veterinary Medicine, , Yangzhou University, ; Yangzhou, 225009 Jiangsu China
                [2 ]Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, 225009 Yangzhou, Jiangsu China
                [3 ]GRID grid.268415.c, Joint International Research Laboratory of Agriculture and Agri-Product Safety, the Ministry of Education of China, , Yangzhou University, ; 225009 Yangzhou, Jiangsu China
                [4 ]GRID grid.268415.c, Institutes of Agricultural Science and Technology Development, , Yangzhou University, ; 225009 Yangzhou, Jiangsu China
                Article
                153
                10.1038/s41426-018-0153-7
                6125322
                30185786
                e07605ac-7f30-4929-860f-00e7243ee201
                © The Author(s) 2018

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 2 May 2018
                : 22 June 2018
                : 27 June 2018
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