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      Self-Amplifying RNA Vaccines Give Equivalent Protection against Influenza to mRNA Vaccines but at Much Lower Doses

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          Abstract

          New vaccine platforms are needed to address the time gap between pathogen emergence and vaccine licensure. RNA-based vaccines are an attractive candidate for this role: they are safe, are produced cell free, and can be rapidly generated in response to pathogen emergence. Two RNA vaccine platforms are available: synthetic mRNA molecules encoding only the antigen of interest and self-amplifying RNA (sa-RNA). sa-RNA is virally derived and encodes both the antigen of interest and proteins enabling RNA vaccine replication. Both platforms have been shown to induce an immune response, but it is not clear which approach is optimal. In the current studies, we compared synthetic mRNA and sa-RNA expressing influenza virus hemagglutinin. Both platforms were protective, but equivalent levels of protection were achieved using 1.25 μg sa-RNA compared to 80 μg mRNA (64-fold less material). Having determined that sa-RNA was more effective than mRNA, we tested hemagglutinin from three strains of influenza H1N1, H3N2 (X31), and B (Massachusetts) as sa-RNA vaccines, and all protected against challenge infection. When sa-RNA was combined in a trivalent formulation, it protected against sequential H1N1 and H3N2 challenges. From this we conclude that sa-RNA is a promising platform for vaccines against viral diseases.

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          Abstract

          RNA vaccines are a promising new approach to control infectious disease. When we compared two influenza RNA vaccine platforms, we observed equivalent levels of protection using less self-amplifying RNA (1.25 μg) compared with synthetic mRNA (80 μg). In addition, a low-dose trivalent self-amplifying RNA protected against sequential H1N1 and H3N2 influenza challenges.

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          Most cited references16

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          Incorporation of pseudouridine into mRNA enhances translation by diminishing PKR activation

          Previous studies have shown that the translation level of in vitro transcribed messenger RNA (mRNA) is enhanced when its uridines are replaced with pseudouridines; however, the reason for this enhancement has not been identified. Here, we demonstrate that in vitro transcripts containing uridine activate RNA-dependent protein kinase (PKR), which then phosphorylates translation initiation factor 2-alpha (eIF-2α), and inhibits translation. In contrast, in vitro transcribed mRNAs containing pseudouridine activate PKR to a lesser degree, and translation of pseudouridine-containing mRNAs is not repressed. RNA pull-down assays demonstrate that mRNA containing uridine is bound by PKR more efficiently than mRNA with pseudouridine. Finally, the role of PKR is validated by showing that pseudouridine- and uridine-containing RNAs were translated equally in PKR knockout cells. These results indicate that the enhanced translation of mRNAs containing pseudouridine, compared to those containing uridine, is mediated by decreased activation of PKR.
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            Role for migratory wild birds in the global spread of avian influenza H5N8.

            (2016)
            Avian influenza viruses affect both poultry production and public health. A subtype H5N8 (clade 2.3.4.4) virus, following an outbreak in poultry in South Korea in January 2014, rapidly spread worldwide in 2014-2015. Our analysis of H5N8 viral sequences, epidemiological investigations, waterfowl migration, and poultry trade showed that long-distance migratory birds can play a major role in the global spread of avian influenza viruses. Further, we found that the hemagglutinin of clade 2.3.4.4 virus was remarkably promiscuous, creating reassortants with multiple neuraminidase subtypes. Improving our understanding of the circumpolar circulation of avian influenza viruses in migratory waterfowl will help to provide early warning of threats from avian influenza to poultry, and potentially human, health.
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              Rapidly produced SAM® vaccine against H7N9 influenza is immunogenic in mice

              The timing of vaccine availability is essential for an effective response to pandemic influenza. In 2009, vaccine became available after the disease peak, and this has motivated the development of next generation vaccine technologies for more rapid responses. The SAM® vaccine platform, now in pre-clinical development, is based on a synthetic, self-amplifying mRNA, delivered by a synthetic lipid nanoparticle (LNP). When used to express seasonal influenza hemagglutinin (HA), a SAM vaccine elicited potent immune responses, comparable to those elicited by a licensed influenza subunit vaccine preparation. When the sequences coding for the HA and neuraminidase (NA) genes from the H7N9 influenza outbreak in China were posted on a web-based data sharing system, the combination of rapid and accurate cell-free gene synthesis and SAM vaccine technology allowed the generation of a vaccine candidate in 8 days. Two weeks after the first immunization, mice had measurable hemagglutinin inhibition (HI) and neutralizing antibody titers against the new virus. Two weeks after the second immunization, all mice had HI titers considered protective. If the SAM vaccine platform proves safe, potent, well tolerated and effective in humans, fully synthetic vaccine technologies could provide unparalleled speed of response to stem the initial wave of influenza outbreaks, allowing first availability of a vaccine candidate days after the discovery of a new virus.
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                Author and article information

                Contributors
                Journal
                Mol Ther
                Mol. Ther
                Molecular Therapy
                American Society of Gene & Cell Therapy
                1525-0016
                1525-0024
                07 February 2018
                05 December 2017
                : 26
                : 2
                : 446-455
                Affiliations
                [1 ]BioNTech RNA Pharmaceuticals GmbH, An der Goldgrube 12, 55131 Mainz, Germany
                [2 ]Mucosal Infection and Immunity Group, Section of Virology, Department of Medicine, St. Mary’s Campus, Imperial College London W2 1PG, UK
                [3 ]BioNTech AG, An der Goldgrube 12, 55131 Mainz, Germany
                [4 ]TRON GmbH, Freiligrathstraße 12, 55131 Mainz, Germany
                Author notes
                []Corresponding author: Annette B. Vogel, BioNTech RNA Pharmaceuticals GmbH, An der Goldgrube 12, 55131 Mainz, Germany. annette.vogel@ 123456biontech.de
                [∗∗ ]Corresponding author: John S. Tregoning, Mucosal Infection and Immunity Group, Section of Virology, Department of Medicine, St. Mary’s Campus, Imperial College London W2 1PG, UK. john.tregoning@ 123456imperial.ac.uk
                [5]

                These authors contributed equally to this work.

                [6]

                Present address: SR Kymab, Cambridge, UK

                Article
                S1525-0016(17)30594-4
                10.1016/j.ymthe.2017.11.017
                5835025
                29275847
                d8baa148-a7bc-469a-970b-ab658e7dc22c
                © 2017 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 29 March 2017
                : 28 November 2017
                Categories
                Original Article

                Molecular medicine
                vaccine,rna,influenza,replicon,trivalent,alphavirus,h1n1,dna
                Molecular medicine
                vaccine, rna, influenza, replicon, trivalent, alphavirus, h1n1, dna

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