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      Independent real‐world application of a clinical‐grade automated prostate cancer detection system

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          Abstract

          Artificial intelligence (AI)‐based systems applied to histopathology whole‐slide images have the potential to improve patient care through mitigation of challenges posed by diagnostic variability, histopathology caseload, and shortage of pathologists. We sought to define the performance of an AI‐based automated prostate cancer detection system, Paige Prostate, when applied to independent real‐world data. The algorithm was employed to classify slides into two categories: benign (no further review needed) or suspicious (additional histologic and/or immunohistochemical analysis required). We assessed the sensitivity, specificity, positive predictive values (PPVs), and negative predictive values (NPVs) of a local pathologist, two central pathologists, and Paige Prostate in the diagnosis of 600 transrectal ultrasound‐guided prostate needle core biopsy regions (‘part‐specimens’) from 100 consecutive patients, and to ascertain the impact of Paige Prostate on diagnostic accuracy and efficiency. Paige Prostate displayed high sensitivity (0.99; CI 0.96–1.0), NPV (1.0; CI 0.98–1.0), and specificity (0.93; CI 0.90–0.96) at the part‐specimen level. At the patient level, Paige Prostate displayed optimal sensitivity (1.0; CI 0.93–1.0) and NPV (1.0; CI 0.91–1.0) at a specificity of 0.78 (CI 0.64–0.89). The 27 part‐specimens considered by Paige Prostate as suspicious, whose final diagnosis was benign, were found to comprise atrophy ( n = 14), atrophy and apical prostate tissue ( n = 1), apical/benign prostate tissue ( n = 9), adenosis ( n = 2), and post‐atrophic hyperplasia ( n = 1). Paige Prostate resulted in the identification of four additional patients whose diagnoses were upgraded from benign/suspicious to malignant. Additionally, this AI‐based test provided an estimated 65.5% reduction of the diagnostic time for the material analyzed. Given its optimal sensitivity and NPV, Paige Prostate has the potential to be employed for the automated identification of patients whose histologic slides could forgo full histopathologic review. In addition to providing incremental improvements in diagnostic accuracy and efficiency, this AI‐based system identified patients whose prostate cancers were not initially diagnosed by three experienced histopathologists. © 2021 The Authors. The Journal of Pathology published by John Wiley & Sons, Ltd. on behalf of The Pathological Society of Great Britain and Ireland.

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          Most cited references19

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          Clinical-grade computational pathology using weakly supervised deep learning on whole slide images

          The development of decision support systems for pathology and their deployment in clinical practice have been hindered by the need for large manually annotated datasets. To overcome this problem, we present a multiple instance learning-based deep learning system that uses only the reported diagnoses as labels for training, thereby avoiding expensive and time-consuming pixel-wise manual annotations. We evaluated this framework at scale on a dataset of 44,732 whole slide images from 15,187 patients without any form of data curation. Tests on prostate cancer, basal cell carcinoma and breast cancer metastases to axillary lymph nodes resulted in areas under the curve above 0.98 for all cancer types. Its clinical application would allow pathologists to exclude 65–75% of slides while retaining 100% sensitivity. Our results show that this system has the ability to train accurate classification models at unprecedented scale, laying the foundation for the deployment of computational decision support systems in clinical practice.
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            Automated deep-learning system for Gleason grading of prostate cancer using biopsies: a diagnostic study

            The Gleason score is the strongest correlating predictor of recurrence for prostate cancer, but has substantial inter-observer variability, limiting its usefulness for individual patients. Specialised urological pathologists have greater concordance; however, such expertise is not widely available. Prostate cancer diagnostics could thus benefit from robust, reproducible Gleason grading. We aimed to investigate the potential of deep learning to perform automated Gleason grading of prostate biopsies.
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              Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study

              An increasing volume of prostate biopsies and a worldwide shortage of urological pathologists puts a strain on pathology departments. Additionally, the high intra-observer and inter-observer variability in grading can result in overtreatment and undertreatment of prostate cancer. To alleviate these problems, we aimed to develop an artificial intelligence (AI) system with clinically acceptable accuracy for prostate cancer detection, localisation, and Gleason grading.
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                Author and article information

                Contributors
                thomas.fuchs@paige.ai
                reisfilj@mskcc.org
                Journal
                J Pathol
                J Pathol
                10.1002/(ISSN)1096-9896
                PATH
                The Journal of Pathology
                John Wiley & Sons, Ltd (Chichester, UK )
                0022-3417
                1096-9896
                27 April 2021
                June 2021
                : 254
                : 2 ( doiID: 10.1002/path.v254.2 )
                : 147-158
                Affiliations
                [ 1 ] Grupo Oncoclinicas Sao Paulo Brazil
                [ 2 ] Instituto Mario Penna Belo Horizonte Brazil
                [ 3 ] Paige New York NY USA
                [ 4 ] Department of Medicine and Human Oncology and Pathogenesis Program Memorial Sloan Kettering Cancer Center New York NY USA
                [ 5 ] Department of Pathology Memorial Sloan Kettering Cancer Center New York NY USA
                [ 6 ] Stat One Wilmington NC USA
                Author notes
                [*] [* ] Correspondence to: JS Reis‐Filho, Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA. E‐mail: reisfilj@ 123456mskcc.org ; or TJ Fuchs, Paige, 11 Times Square, Fl 37, New York, NY 10036, USA.

                E‐mail: thomas.fuchs@ 123456paige.ai

                Author information
                https://orcid.org/0000-0003-2969-3173
                Article
                PATH5662
                10.1002/path.5662
                8252036
                33904171
                d64242bf-5cce-47a1-97cd-eb99d703a8b6
                © 2021 The Authors. The Journal of Pathology published by John Wiley & Sons, Ltd. on behalf of The Pathological Society of Great Britain and Ireland.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 23 February 2021
                : 05 October 2020
                : 05 March 2021
                Page count
                Figures: 6, Tables: 1, Pages: 12, Words: 6591
                Funding
                Funded by: Breast Cancer Research Foundation , open-funder-registry 10.13039/100001006;
                Funded by: National Cancer Institute , open-funder-registry 10.13039/100000054;
                Award ID: P30CA008748
                Award ID: K12CA184746
                Funded by: Paige, Inc
                Categories
                Original Paper
                Original Papers
                Custom metadata
                2.0
                June 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.0.4 mode:remove_FC converted:02.07.2021

                Pathology
                artificial intelligence,histopathology,diagnosis,screening,prostate cancer,deep learning,machine learning

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