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      Is Open Access

      Alzheimer's disease BIN1 coding variants increase intracellular Aβ levels by interfering with BACE1 recycling

      research-article
      , , ,
      The Journal of Biological Chemistry
      American Society for Biochemistry and Molecular Biology
      Bin1, BACE1, endocytic recycling, Alzheimer's disease, amyloid-beta (Aβ), genetic disease, trafficking, cell biology, genetic polymorphism, neurodegenerative disease, AD, Alzheimer's disease, AP-2, adaptor protein complex 2, APOE4, apolipoprotein E ε4, APP, amyloid precursor protein, ARF6, ADP-ribosylation factor 6, Aβ, amyloid-beta, BACE1, β-site APP-cleaving enzyme 1 or β-secretase 1, BAR, BIN1/amphiphysin/RVS167 domain, BIN1, bridging integrator 1/MYC box-dependent-interacting protein 1, BSA, bovine serum albumin, CTF, carboxyl-terminal fragment, cDNA, complementary DNA, CLAP, clathrin and AP2-binding domain, DMEM, Dulbecco's modified eagle medium, EEA1, early endosome antigen 1, FAD, familial Alzheimer's disease, EGTA, ethylene glycol tetraacetic acid, FBS, fetal bovine serum, GFP, green fluorescent protein, GWAS, genome-wide association studies, HRP, horseradish peroxidase, IP, immunoprecipitation, IgG, immunoglobulin G, KD, knockdown, LOAD, late-onset Alzheimer's disease, N2a, Neuro2a, mAb, monoclonal antibody, OE, overexpression, pAb, polyclonal antibody, PBS, phosphate-buffered saline, PIC, protease inhibitor cocktail, RIPA, radio-immunoprecipitation assay, RVS167, reduced viability upon starvation protein 167, SDS-PAGE, sodium dodecyl sulfate–polyacrylamide gel electrophoresis, SH3, src homology 3 domain, siRNA, small interfering RNA, SNX4, sorting nexin-4

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          Abstract

          Genetic studies have identified BIN1 as the second most important risk locus associated with late-onset Alzheimer's disease (LOAD). However, it is unclear how mutation of this locus mechanistically promotes Alzheimer’s disease (AD) pathology. Here we show the consequences of two coding variants in BIN1 (rs754834233 and rs138047593), both in terms of intracellular beta-amyloid (iAbeta) accumulation and early endosome enlargement, two interrelated early cytopathological AD phenotypes, supporting their association with LOAD risk. We previously found that Bin1 deficiency potentiates iAbeta production by enabling BACE1 cleavage of the amyloid precursor protein in enlarged early endosomes due to decreased BACE1 recycling. Here, we discovered that the expression of the two LOAD mutant forms of Bin1 does not rescue the iAbeta accumulation and early endosome enlargement induced by Bin1 knockdown and recovered by wild-type Bin1. Moreover, the overexpression of Bin1 mutants, but not wild-type Bin1, increased the iAbeta42 fragment by reducing the recycling of BACE1, which accumulated in early endosomes, recapitulating the phenotype of Bin1 knockdown. We showed that the mutations in Bin1 reduced its interaction with BACE1. The endocytic recycling of transferrin was similarly affected, indicating that Bin1 is a general regulator of endocytic recycling. These data demonstrate that the LOAD-coding variants in Bin1 lead to a loss of function in endocytic recycling, which may be an early causal mechanism of LOAD.

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          Most cited references77

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          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.

            Eleven susceptibility loci for late-onset Alzheimer's disease (LOAD) were identified by previous studies; however, a large portion of the genetic risk for this disease remains unexplained. We conducted a large, two-stage meta-analysis of genome-wide association studies (GWAS) in individuals of European ancestry. In stage 1, we used genotyped and imputed data (7,055,881 SNPs) to perform meta-analysis on 4 previously published GWAS data sets consisting of 17,008 Alzheimer's disease cases and 37,154 controls. In stage 2, 11,632 SNPs were genotyped and tested for association in an independent set of 8,572 Alzheimer's disease cases and 11,312 controls. In addition to the APOE locus (encoding apolipoprotein E), 19 loci reached genome-wide significance (P < 5 × 10(-8)) in the combined stage 1 and stage 2 analysis, of which 11 are newly associated with Alzheimer's disease.
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              BAR domains as sensors of membrane curvature: the amphiphysin BAR structure.

              The BAR (Bin/amphiphysin/Rvs) domain is the most conserved feature in amphiphysins from yeast to human and is also found in endophilins and nadrins. We solved the structure of the Drosophila amphiphysin BAR domain. It is a crescent-shaped dimer that binds preferentially to highly curved negatively charged membranes. With its N-terminal amphipathic helix and BAR domain (N-BAR), amphiphysin can drive membrane curvature in vitro and in vivo. The structure is similar to that of arfaptin2, which we find also binds and tubulates membranes. From this, we predict that BAR domains are in many protein families, including sorting nexins, centaurins, and oligophrenins. The universal and minimal BAR domain is a dimerization, membrane-binding, and curvature-sensing module.
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                Author and article information

                Contributors
                Journal
                J Biol Chem
                J Biol Chem
                The Journal of Biological Chemistry
                American Society for Biochemistry and Molecular Biology
                0021-9258
                1083-351X
                08 August 2021
                September 2021
                08 August 2021
                : 297
                : 3
                : 101056
                Affiliations
                [1]iNOVA4Health, CEDOC, NOVA Medical School, NMS, Universidade Nova de Lisboa, Lisboa, Portugal
                Author notes
                []For correspondence: Cláudia Guimas Almeida claudia.almeida@ 123456nms.unl.pt
                Article
                S0021-9258(21)00858-9 101056
                10.1016/j.jbc.2021.101056
                8413894
                34375641
                d564a080-fcdb-43c3-bde4-dc20b442bedf
                © 2021 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 9 June 2021
                : 29 July 2021
                Categories
                Research Article

                Biochemistry
                bin1,bace1,endocytic recycling,alzheimer's disease,amyloid-beta (aβ),genetic disease,trafficking,cell biology,genetic polymorphism,neurodegenerative disease,ad, alzheimer's disease,ap-2, adaptor protein complex 2,apoe4, apolipoprotein e ε4,app, amyloid precursor protein,arf6, adp-ribosylation factor 6,aβ, amyloid-beta,bace1, β-site app-cleaving enzyme 1 or β-secretase 1,bar, bin1/amphiphysin/rvs167 domain,bin1, bridging integrator 1/myc box-dependent-interacting protein 1,bsa, bovine serum albumin,ctf, carboxyl-terminal fragment,cdna, complementary dna,clap, clathrin and ap2-binding domain,dmem, dulbecco's modified eagle medium,eea1, early endosome antigen 1,fad, familial alzheimer's disease,egta, ethylene glycol tetraacetic acid,fbs, fetal bovine serum,gfp, green fluorescent protein,gwas, genome-wide association studies,hrp, horseradish peroxidase,ip, immunoprecipitation,igg, immunoglobulin g,kd, knockdown,load, late-onset alzheimer's disease,n2a, neuro2a,mab, monoclonal antibody,oe, overexpression,pab, polyclonal antibody,pbs, phosphate-buffered saline,pic, protease inhibitor cocktail,ripa, radio-immunoprecipitation assay,rvs167, reduced viability upon starvation protein 167,sds-page, sodium dodecyl sulfate–polyacrylamide gel electrophoresis,sh3, src homology 3 domain,sirna, small interfering rna,snx4, sorting nexin-4

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