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      A psychiatric disease-related circular RNA controls synaptic gene expression and cognition

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          Abstract

          Although circular RNAs (circRNAs) are enriched in the mammalian brain, very little is known about their potential involvement in brain function and psychiatric disease. Here, we show that circHomer1a, a neuronal-enriched circRNA abundantly expressed in the frontal cortex, derived from Homer protein homolog 1 ( HOMER1), is significantly reduced in both the prefrontal cortex (PFC) and induced pluripotent stem cell-derived neuronal cultures from patients with schizophrenia (SCZ) and bipolar disorder (BD). Moreover, alterations in circHomer1a were positively associated with the age of onset of SCZ in both the dorsolateral prefrontal cortex (DLPFC) and orbitofrontal cortex (OFC). No correlations between the age of onset of SCZ and linear HOMER1 mRNA were observed, whose expression was mostly unaltered in BD and SCZ postmortem brain. Using in vivo circRNA-specific knockdown of circHomer1a in mouse PFC, we show that it modulates the expression of numerous alternative mRNA transcripts from genes involved in synaptic plasticity and psychiatric disease. Intriguingly, in vivo circHomer1a knockdown in mouse OFC resulted in specific deficits in OFC-mediated cognitive flexibility. Lastly, we demonstrate that the neuronal RNA-binding protein HuD binds to circHomer1a and can influence its synaptic expression in the frontal cortex. Collectively, our data uncover a novel psychiatric disease-associated circRNA that regulates synaptic gene expression and cognitive flexibility.

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          Most cited references86

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          Circular RNAs are a large class of animal RNAs with regulatory potency.

          Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
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            Natural RNA circles function as efficient microRNA sponges.

            MicroRNAs (miRNAs) are important post-transcriptional regulators of gene expression that act by direct base pairing to target sites within untranslated regions of messenger RNAs. Recently, miRNA activity has been shown to be affected by the presence of miRNA sponge transcripts, the so-called competing endogenous RNA in humans and target mimicry in plants. We previously identified a highly expressed circular RNA (circRNA) in human and mouse brain. Here we show that this circRNA acts as a miR-7 sponge; we term this circular transcript ciRS-7 (circular RNA sponge for miR-7). ciRS-7 contains more than 70 selectively conserved miRNA target sites, and it is highly and widely associated with Argonaute (AGO) proteins in a miR-7-dependent manner. Although the circRNA is completely resistant to miRNA-mediated target destabilization, it strongly suppresses miR-7 activity, resulting in increased levels of miR-7 targets. In the mouse brain, we observe overlapping co-expression of ciRS-7 and miR-7, particularly in neocortical and hippocampal neurons, suggesting a high degree of endogenous interaction. We further show that the testis-specific circRNA, sex-determining region Y (Sry), serves as a miR-138 sponge, suggesting that miRNA sponge effects achieved by circRNA formation are a general phenomenon. This study serves as the first, to our knowledge, functional analysis of a naturally expressed circRNA.
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              Biological Insights From 108 Schizophrenia-Associated Genetic Loci

              Summary Schizophrenia is a highly heritable disorder. Genetic risk is conferred by a large number of alleles, including common alleles of small effect that might be detected by genome-wide association studies. Here, we report a multi-stage schizophrenia genome-wide association study of up to 36,989 cases and 113,075 controls. We identify 128 independent associations spanning 108 conservatively defined loci that meet genome-wide significance, 83 of which have not been previously reported. Associations were enriched among genes expressed in brain providing biological plausibility for the findings. Many findings have the potential to provide entirely novel insights into aetiology, but associations at DRD2 and multiple genes involved in glutamatergic neurotransmission highlight molecules of known and potential therapeutic relevance to schizophrenia, and are consistent with leading pathophysiological hypotheses. Independent of genes expressed in brain, associations were enriched among genes expressed in tissues that play important roles in immunity, providing support for the hypothesized link between the immune system and schizophrenia.
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                Author and article information

                Contributors
                nmellios@salud.unm.edu
                Journal
                Mol Psychiatry
                Mol Psychiatry
                Molecular Psychiatry
                Nature Publishing Group UK (London )
                1359-4184
                1476-5578
                27 January 2020
                27 January 2020
                2020
                : 25
                : 11
                : 2712-2727
                Affiliations
                [1 ]GRID grid.266832.b, ISNI 0000 0001 2188 8502, Department of Neurosciences, , University of New Mexico School of Medicine, ; Albuquerque, NM USA
                [2 ]Autophagy inflammation and metabolism (AIM) center, Albuquerque, NM USA
                [3 ]GRID grid.59734.3c, ISNI 0000 0001 0670 2351, Department of Psychiatry, , Icahn School of Medicine at Mount Sinai, ; New York, NY USA
                [4 ]GRID grid.32224.35, ISNI 0000 0004 0386 9924, Departments of Neurology and Psychiatry, Center for Genomic Medicine, Chemical Neurobiology Laboratory, , Massachusetts General Hospital and Harvard Medical School, ; Boston, MA USA
                [5 ]GRID grid.453353.7, ISNI 0000 0004 0473 2858, Laboratory of Brain Research, , Stanley Medical Research Institute, ; Chevy Chase, MD USA
                [6 ]GRID grid.38142.3c, ISNI 000000041936754X, Department of Psychiatry, , Harvard Medical School, ; Boston, MA USA
                [7 ]GRID grid.32224.35, ISNI 0000 0004 0386 9924, Center for Experimental Drugs and Diagnostics, Center for Genomic Medicine, , Massachusetts General Hospital, ; Boston, MA USA
                [8 ]GRID grid.34429.38, ISNI 0000 0004 1936 8198, Present Address: Department of Molecular and Cellular Biology, , University of Guelph, ; Guelph, ON Canada
                Author information
                http://orcid.org/0000-0001-5486-6027
                http://orcid.org/0000-0002-6797-1894
                http://orcid.org/0000-0003-0993-5956
                http://orcid.org/0000-0002-0310-1144
                Article
                653
                10.1038/s41380-020-0653-4
                7577899
                31988434
                d3821b59-a28c-420b-82c4-a310ad9264dc
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 12 August 2019
                : 17 December 2019
                : 16 January 2020
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000025, U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH);
                Award ID: 1R56MH119150-01
                Award ID: 1R01MH101454-01
                Award ID: 1R01MH106056-01
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100000057, U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS);
                Award ID: 1P20GM121176-01
                Award Recipient :
                Funded by: U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH)
                Funded by: U.S. Department of Health & Human Services | NIH | National Institute of Mental Health (NIMH)
                Categories
                Immediate Communication
                Custom metadata
                © Springer Nature Limited 2020

                Molecular medicine
                neuroscience,schizophrenia,bipolar disorder
                Molecular medicine
                neuroscience, schizophrenia, bipolar disorder

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