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      Associations of NADPH Oxidase Related Genes with Blood Pressure Changes and Incident Hypertension: The GenSalt Study

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          Abstract

          Previous studies have indicated that reactive oxygen species produced by NADPH oxidase (Nox) are important risk factors of hypertension. The current study aims to examine the associations of Nox related genes with longitudinal blood pressure (BP) changes and the risk of incident hypertension in the Genetic Epidemiology Network of Salt Sensitivity (GenSalt) follow-up study. A total of 1,768 participants from 633 families were included in our analysis. Nine BP measurements were obtained in the morning at baseline and during two follow-up visits. The mixed-effect models were used to investigate the associations of 52 tagged single nucleotide polymorphisms in 11 Nox related genes with BP changes and incident hypertension. Gene-based analyses were performed by truncated product method (TPM) and Versatile Gene-based Association Study (VEGAS). Over the 7.2 years of follow-up, systolic BP (SBP) and diastolic BP (DBP) increased, and 32.1% (512) of participants developed hypertension. SNPs rs12094228, rs16861188 and rs12066019 in NCF2 were significantly associated with longitudinal change in SBP ( P interaction = 1.1 × 10 −3, 2.8 × 10 −3 and 1.2 × 10 −3, respectively). Gene-based analyses revealed that NCF2 was significantly associated with SBP ( P TPM = 1.00 × 10 −6, P VEGAS = 1.26 × 10 −4) and DBP changes ( P TPM = 5.84 × 10 −4, P VEGAS = 1.04 × 10 −3). These findings suggested that NCF2 may play an important role in BP changes over time in the Han Chinese population.

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          Most cited references17

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          Efficiency and power in genetic association studies.

          We investigated selection and analysis of tag SNPs for genome-wide association studies by specifically examining the relationship between investment in genotyping and statistical power. Do pairwise or multimarker methods maximize efficiency and power? To what extent is power compromised when tags are selected from an incomplete resource such as HapMap? We addressed these questions using genotype data from the HapMap ENCODE project, association studies simulated under a realistic disease model, and empirical correction for multiple hypothesis testing. We demonstrate a haplotype-based tagging method that uniformly outperforms single-marker tests and methods for prioritization that markedly increase tagging efficiency. Examining all observed haplotypes for association, rather than just those that are proxies for known SNPs, increases power to detect rare causal alleles, at the cost of reduced power to detect common causal alleles. Power is robust to the completeness of the reference panel from which tags are selected. These findings have implications for prioritizing tag SNPs and interpreting association studies.
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            Biochemistry, physiology, and pathophysiology of NADPH oxidases in the cardiovascular system.

            The NADPH oxidase (Nox) enzymes are critical mediators of cardiovascular physiology and pathophysiology. These proteins are expressed in virtually all cardiovascular cells, and regulate such diverse functions as differentiation, proliferation, apoptosis, senescence, inflammatory responses and oxygen sensing. They target a number of important signaling molecules, including kinases, phosphatases, transcription factors, ion channels, and proteins that regulate the cytoskeleton. Nox enzymes have been implicated in many different cardiovascular pathologies: atherosclerosis, hypertension, cardiac hypertrophy and remodeling, angiogenesis and collateral formation, stroke, and heart failure. In this review, we discuss in detail the biochemistry of Nox enzymes expressed in the cardiovascular system (Nox1, 2, 4, and 5), their roles in cardiovascular cell biology, and their contributions to disease development.
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              VEGAS2: Software for More Flexible Gene-Based Testing.

              Gene-based tests such as versatile gene-based association study (VEGAS) are commonly used following per-single nucleotide polymorphism (SNP) GWAS (genome-wide association studies) analysis. Two limitations of VEGAS were that the HapMap2 reference set was used to model the correlation between SNPs and only autosomal genes were considered. HapMap2 has now been superseded by the 1,000 Genomes reference set, and whereas early GWASs frequently ignored the X chromosome, it is now commonly included. Here we have developed VEGAS2, an extension that uses 1,000 Genomes data to model SNP correlations across the autosomes and chromosome X. VEGAS2 allows greater flexibility when defining gene boundaries. VEGAS2 offers both a user-friendly, web-based front end and a command line Linux version. The online version of VEGAS2 can be accessed through https://vegas2.qimrberghofer.edu.au/. The command line version can be downloaded from https://vegas2.qimrberghofer.edu.au/zVEGAS2offline.tgz. The command line version is developed in Perl, R and shell scripting languages; source code is available for further development.
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                Author and article information

                Journal
                8811625
                5250
                J Hum Hypertens
                J Hum Hypertens
                Journal of human hypertension
                0950-9240
                1476-5527
                24 January 2018
                20 February 2018
                April 2018
                20 August 2018
                : 32
                : 4
                : 287-293
                Affiliations
                [1 ]Department of Epidemiology, State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100037, China
                [2 ]Department of Epidemiology, Tulane University School of Public Health and Tropical Medicine, New Orleans, Louisiana 70112, USA
                [3 ]Department of Epidemiology, Human Genetics and Environmental Sciences, University of Texas School of Public Health, Houston, Texas, USA
                [4 ]Division of Biostatistics, Washington University School of Medicine, St. Louis, Missouri, USA
                Author notes
                Correspondence: Hongfan Li, M.S., State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, 167 Beilishi Road, Beijing, 100037, China, ccmls0965@ 123456sina.com , Tel: 86-10-60866083 OR Correspondence: Shufeng Chen, PhD., State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, National Center for Cardiovascular Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College, 167 Beilishi Road, Beijing, 100037, China, shufengchen2001@ 123456163.com , Tel: 86-10-60866589
                [*]

                These authors contributed equally to this work.

                Article
                NIHMS936757
                10.1038/s41371-018-0041-6
                5889722
                29463833
                b50ec77c-ed57-4514-a7b9-e4844f68556f

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                Categories
                Article

                Cardiovascular Medicine
                blood pressure changes,genetic association,hypertension,nadph oxidase
                Cardiovascular Medicine
                blood pressure changes, genetic association, hypertension, nadph oxidase

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