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      The inner junction protein CFAP20 functions in motile and non-motile cilia and is critical for vision

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      1 , 2 , , 3 , 4 , 5 , 6 , 7 , 8 , 2 , 3 , 4 , 8 , 2 , 5 , 9 , 1 , 10 , 11 , 12 , 12 , 13 , 14 , 15 , 14 , 16 , 17 , Genomics England Research Consortium, 6 , 7 , 2 , 9 , 18 , 19 , 6 , 6 , 7 , 20 , 8 , 1 , 2 , , 21 , , 2 , 5 , , 6 , 7 , 22 , , 3 , 4 ,
      Nature Communications
      Nature Publishing Group UK
      Molecular biology, Retinal diseases, Medical genetics, Mechanisms of disease, Hereditary eye disease

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          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Motile and non-motile cilia are associated with mutually-exclusive genetic disorders. Motile cilia propel sperm or extracellular fluids, and their dysfunction causes primary ciliary dyskinesia. Non-motile cilia serve as sensory/signalling antennae on most cell types, and their disruption causes single-organ ciliopathies such as retinopathies or multi-system syndromes. CFAP20 is a ciliopathy candidate known to modulate motile cilia in unicellular eukaryotes. We demonstrate that in zebrafish, cfap20 is required for motile cilia function, and in C. elegans, CFAP-20 maintains the structural integrity of non-motile cilia inner junctions, influencing sensory-dependent signalling and development. Human patients and zebrafish with CFAP20 mutations both exhibit retinal dystrophy. Hence, CFAP20 functions within a structural/functional hub centered on the inner junction that is shared between motile and non-motile cilia, and is distinct from other ciliopathy-associated domains or macromolecular complexes. Our findings suggest an uncharacterised pathomechanism for retinal dystrophy, and potentially for motile and non-motile ciliopathies in general.

          Abstract

          Motile and non-motile cilia have distinct functions and protein complexes associated with them. Here, the authors show the conserved protein CFAP20 is important for both motile and non-motile cilia and is distinct from other ciliopathy-associated domains or macromolecular complexes.

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          Most cited references123

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          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            The mutational constraint spectrum quantified from variation in 141,456 humans

            Genetic variants that inactivate protein-coding genes are a powerful source of information about the phenotypic consequences of gene disruption: genes that are crucial for the function of an organism will be depleted of such variants in natural populations, whereas non-essential genes will tolerate their accumulation. However, predicted loss-of-function variants are enriched for annotation errors, and tend to be found at extremely low frequencies, so their analysis requires careful variant annotation and very large sample sizes 1 . Here we describe the aggregation of 125,748 exomes and 15,708 genomes from human sequencing studies into the Genome Aggregation Database (gnomAD). We identify 443,769 high-confidence predicted loss-of-function variants in this cohort after filtering for artefacts caused by sequencing and annotation errors. Using an improved model of human mutation rates, we classify human protein-coding genes along a spectrum that represents tolerance to inactivation, validate this classification using data from model organisms and engineered human cells, and show that it can be used to improve the power of gene discovery for both common and rare diseases.
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              Animal models of necrotizing enterocolitis: review of the literature and state of the art

              Abstract Necrotizing enterocolitis (NEC) remains the leading cause of gastrointestinal surgical emergency in preterm neonates. Over the last five decades, a variety of experimental models have been developed to study the pathophysiology of this disease and to test the effectiveness of novel therapeutic strategies. Experimental NEC is mainly modeled in neonatal rats, mice and piglets. In this review, we focus on these experimental models and discuss the major advantages and disadvantages of each. We also briefly discuss other models that are not as widely used but have contributed to our current knowledge of NEC.
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                Author and article information

                Contributors
                pchrysta@ualberta.ca
                ted.allison@ualberta.ca
                ping-yee.au@albertahealthservices.ca
                macdonal@ualberta.ca
                g.arno@ucl.ac.uk
                leroux@sfu.ca
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                3 November 2022
                3 November 2022
                2022
                : 13
                : 6595
                Affiliations
                [1 ]GRID grid.17089.37, ISNI 0000 0001 2190 316X, Department of Biological Sciences, , University of Alberta, ; Edmonton, AB Canada
                [2 ]GRID grid.17089.37, ISNI 0000 0001 2190 316X, Department of Medical Genetics, , University of Alberta, ; Edmonton, AB Canada
                [3 ]GRID grid.61971.38, ISNI 0000 0004 1936 7494, Department of Molecular Biology and Biochemistry, , Simon Fraser University, ; Burnaby, BC Canada
                [4 ]GRID grid.61971.38, ISNI 0000 0004 1936 7494, Centre for Cell Biology, Development, and Disease, , Simon Fraser University, ; Burnaby, BC Canada
                [5 ]GRID grid.17089.37, ISNI 0000 0001 2190 316X, Department of Ophthalmology & Visual Science, , University of Alberta, ; Edmonton, AB Canada
                [6 ]GRID grid.83440.3b, ISNI 0000000121901201, UCL Institute of Ophthalmology, ; London, UK
                [7 ]GRID grid.439257.e, ISNI 0000 0000 8726 5837, Moorfields Eye Hospital, ; London, UK
                [8 ]GRID grid.7886.1, ISNI 0000 0001 0768 2743, School of Biomolecular and Biomedical Science, , Conway Institute, University College Dublin, Belfield, ; Dublin 4, Ireland
                [9 ]GRID grid.17089.37, ISNI 0000 0001 2190 316X, Division of Anatomy, Department of Surgery, , University of Alberta, ; Edmonton, AB Canada
                [10 ]GRID grid.413574.0, ISNI 0000 0001 0693 8815, Lethbridge Outreach Genetics Service, , Alberta Health Services, ; Lethbridge, AB Canada
                [11 ]GRID grid.439733.9, ISNI 0000 0004 0449 9216, Western Eye Hospital, Imperial College Healthcare NHS Trust, ; London, UK
                [12 ]GRID grid.7445.2, ISNI 0000 0001 2113 8111, ICORG, , Imperial College London, ; London, UK
                [13 ]GRID grid.8348.7, ISNI 0000 0001 2306 7492, Oxford Eye Hospital, Oxford University Hospitals NHS Foundation Trust, ; Oxford, UK
                [14 ]GRID grid.5379.8, ISNI 0000000121662407, Manchester Centre for Genomic Medicine, Division of Evolution and Genomic Sciences, School of Biological Sciences, Faculty of Biology, Medicine and Health, , University of Manchester, ; Manchester, UK
                [15 ]GRID grid.416523.7, ISNI 0000 0004 0641 2620, Manchester Centre for Genomic Medicine, , St Mary’s Hospital, Manchester University NHS Foundation Trust, Health Innovation Manchester, ; Manchester, UK
                [16 ]GRID grid.5379.8, ISNI 0000000121662407, Division of Evolution and Genomic Sciences, School of Biological Sciences, , University of Manchester, ; Manchester, UK
                [17 ]GRID grid.498322.6, Genomics England, ; London, UK
                [18 ]GRID grid.17089.37, ISNI 0000 0001 2190 316X, Department of Cell Biology, , University of Alberta, ; Edmonton, AB Canada
                [19 ]GRID grid.17089.37, ISNI 0000 0001 2190 316X, Women and Children’s Health Research Institute, , University of Alberta, ; Edmonton, AB Canada
                [20 ]GRID grid.5645.2, ISNI 000000040459992X, Department of Cell Biology, , Erasmus University Medical Centre, ; Rotterdam, The Netherlands
                [21 ]GRID grid.22072.35, ISNI 0000 0004 1936 7697, Department of Medical Genetics, , Alberta Children’s Hospital Research Institute, Cumming School of Medicine, University of Calgary, ; Calgary, AB Canada
                [22 ]GRID grid.424537.3, ISNI 0000 0004 5902 9895, North Thames Genomic Laboratory Hub, , Great Ormond Street Hospital for Children NHS Foundation Trust, ; London, UK
                [23 ]GRID grid.4868.2, ISNI 0000 0001 2171 1133, William Harvey Research Institute, , Queen Mary University of London, ; London, EC1M 6BQ UK
                Author information
                http://orcid.org/0000-0002-5371-1178
                http://orcid.org/0000-0003-3368-5221
                http://orcid.org/0000-0002-9848-1302
                http://orcid.org/0000-0001-9094-6745
                http://orcid.org/0000-0001-5012-7147
                http://orcid.org/0000-0002-7938-876X
                http://orcid.org/0000-0001-8663-6525
                http://orcid.org/0000-0003-1137-9768
                http://orcid.org/0000-0003-1254-0832
                http://orcid.org/0000-0001-6429-654X
                http://orcid.org/0000-0002-7524-171X
                http://orcid.org/0000-0002-8461-4864
                http://orcid.org/0000-0002-9533-7217
                http://orcid.org/0000-0001-7472-8385
                http://orcid.org/0000-0002-6165-7888
                http://orcid.org/0000-0003-0788-9298
                Article
                33820
                10.1038/s41467-022-33820-w
                9633640
                36329026
                b464f4e1-b5c1-451d-a777-951cc4975d81
                © The Author(s) 2022

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 6 August 2021
                : 3 October 2022
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100000024, Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada);
                Award ID: PJT-156042
                Award ID: M-UBC-27R00211
                Award Recipient :
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                © The Author(s) 2022

                Uncategorized
                molecular biology,retinal diseases,medical genetics,mechanisms of disease,hereditary eye disease

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