Dan Vanderpool:
ORCID: https://orcid.org/0000-0002-6856-5636
Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
Project administrationRole: SoftwareRole: VisualizationRole: Writing – original draftRole:
Writing – review & editing
Bui Quang Minh: Role: MethodologyRole: Software
Robert Lanfear:
ORCID: https://orcid.org/0000-0002-1140-2596
Role: Methodology
Daniel Hughes: Role: Data curationRole: Resources
Shwetha Murali: Role: Data curationRole: Resources
R. Alan Harris:
ORCID: https://orcid.org/0000-0002-7333-4752
Role: Data curationRole: Resources
Muthuswamy Raveendran:
ORCID: https://orcid.org/0000-0001-6185-4059
Role: Data curationRole: Resources
Donna M. Muzny: Role: Data curationRole: Resources
Richard A. Gibbs: Role: Data curationRole: Resources
Kim C. Worley:
ORCID: https://orcid.org/0000-0002-0282-1000
Role: MethodologyRole: Software
Jeffrey Rogers:
ORCID: https://orcid.org/0000-0002-7374-6490
Role: Funding acquisitionRole: Project administrationRole: SupervisionRole: Writing
– review & editing
Matthew W. Hahn:
ORCID: https://orcid.org/0000-0002-5731-8808
Role: ConceptualizationRole: Funding acquisitionRole: MethodologyRole: Project administrationRole:
SupervisionRole: Writing – original draftRole: Writing – review & editing
Chris D. Jiggins: Role: Academic Editor
Journal ID (nlm-ta): PLoS Biol
Journal ID (iso-abbrev): PLoS Biol
Journal ID (publisher-id): plos
Journal ID (pmc): plosbiol
Title:
PLoS Biology
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1544-9173
ISSN
(Electronic):
1545-7885
Publication date
(Electronic):
3
December
2020
Publication date Collection:
December
2020
Publication date PMC-release: 3
December
2020
Volume: 18
Issue: 12
Electronic Location Identifier: e3000954
Affiliations
[1
]
Department of Biology and Department of Computer Science, Indiana University, Bloomington,
Indiana, United States of America
[2
]
Research School of Computer Science, Australian National University, Canberra, Australian
Capital Territory, Australia
[3
]
Research School of Biology, Australian National University, Canberra, Australian Capital
Territory, Australia
[4
]
Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, United
States of America
[5
]
Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas,
United States of America
[6
]
Department of Computer Science and Software Engineering and Department of Biology
and Biomedical Engineering, Rose-Hulman Institute of Technology, Terre Haute, Indiana,
United States of America
University of Cambridge, UNITED KINGDOM
Author notes
The authors have declared that no competing interests exist.
Author information
Article
Publisher ID:
PBIOLOGY-D-20-01019
DOI: 10.1371/journal.pbio.3000954
PMC ID: 7738166
PubMed ID: 33270638
SO-VID: b3e2a4b2-55fe-452b-9ccc-a25ce858759a
Copyright © © 2020 Vanderpool et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by: funder-id http://dx.doi.org/10.13039/501100008982, National Science Foundation;
Award ID: DBI-1564611
Award Recipient
:
ORCID: https://orcid.org/0000-0002-5731-8808
Matthew W. Hahn
Funded by: funder-id http://dx.doi.org/10.13039/501100008982, National Science Foundation;
Award ID: DEB-1936187
Award Recipient
:
ORCID: https://orcid.org/0000-0002-5731-8808
Matthew W. Hahn
Funded by: Chan-Zuckerberg Initiative grant for Essential Open Source Software for Science
Award Recipient
:
Bui Quang Minh
Funded by: Chan-Zuckerberg Initiative grant for Essential Open Source Software for Science
Award Recipient
:
ORCID: https://orcid.org/0000-0002-1140-2596
Robert Lanfear
Funded by: Australian Research Council
Award ID: DP-200103151
Award Recipient
:
Bui Quang Minh
Funded by: Australian Research Council
Award ID: DP-200103151
Award Recipient
:
ORCID: https://orcid.org/0000-0002-1140-2596
Robert Lanfear
Funded by: Australian Research Council
Award ID: DP-200103151
Award Recipient
:
ORCID: https://orcid.org/0000-0002-5731-8808
Matthew W. Hahn
Funded by: Australian National University Futures Grant
Award Recipient
:
ORCID: https://orcid.org/0000-0002-1140-2596
Robert Lanfear
Funding for this study was provided by grants from the National Science Foundation,
grant numbers: DBI-1564611 and DEB-1936187 awarded to M.W.H. Salary was provided to
D.V. and M.W.H by grant number: DBI-1564611. Additional salary was provided to M.W.H
by grant number: DEB-1936187. The authors received no specific funding for this work.
Additional funding was provided by the Chan-Zuckerberg Initiative grant for Essential
Open Source Software for Science (
https://chanzuckerberg.com/eoss/) awarded to B.Q.M. and R.L. The authors received no specific funding for this work.
Additional funding was provided by the Australian Research Council under grant number:
DP-200103151 awarded to R.L., B.Q.M., and M.W.H. The authors received no specific
funding for this work. Additional funding was provided by a Australian National University
(
https://www.anu.edu.au/) Futures grant awarded to R.L, which paid salary for B.Q.M. The sequencing and assembly
of the colobus, pig-tailed macaque, and drill genomes was funded by National Institutes
of Health grant number: U54-HG006484 awarded to R.G. Salaries from this award were
received by R.G., J.R., K.W., S.M., D.H., and D.M. The funders had no role in study
design, data collection and analysis, decision to publish, or preparation of the manuscript.
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Computer and Information Sciences
Subject:
Data Management
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Eukaryota
Subject:
Animals
Subject:
Vertebrates
Subject:
Amniotes
Subject:
Mammals
Subject:
Primates
Subject:
Biology and Life Sciences
Subject:
Zoology
Subject:
Animals
Subject:
Vertebrates
Subject:
Amniotes
Subject:
Mammals
Subject:
Primates
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Processes
Subject:
Introgression
Subject:
Research and Analysis Methods
Subject:
Database and Informatics Methods
Subject:
Bioinformatics
Subject:
Sequence Analysis
Subject:
Sequence Alignment
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Animal Genomics
Subject:
Mammalian Genomics
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genetic Loci
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Animal Phylogenetics
Subject:
Biology and Life Sciences
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Animal Phylogenetics
Subject:
Computer and Information Sciences
Subject:
Data Management
Subject:
Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
Subject:
Animal Phylogenetics
Subject:
Biology and Life Sciences
Subject:
Zoology
Subject:
Animal Phylogenetics
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Genome Annotation
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
Subject:
Genome Annotation
