5
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Clinical and In Vitro Evidence Favoring Immunoglobulin Treatment of a Chronic Norovirus Infection in a Patient With Common Variable Immunodeficiency

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Background

          Immunocompromised individuals can become chronically infected with norovirus, but effective antiviral therapies are not yet available.

          Methods

          Treatments with nitazoxanide, ribavirin, interferon alpha-2a, and nasoduodenally administered immunoglobulins were evaluated sequentially in an immunocompromised patient chronically infected with norovirus. In support, these components were also applied to measure norovirus inhibition in intestinal enteroid cultures in vitro. Viral RNA levels were determined in fecal and plasma samples during each treatment and viral genomes were sequenced.

          Results

          None of the antivirals resulted in a reduction of viral RNA levels in feces or plasma. However, during ribavirin treatment, there was an increased accumulation of virus genome mutations. In vitro, an effect of interferon alpha-2a on virus replication was observed and a genetically related strain was neutralized effectively in vitro using immunoglobulins and post-norovirus–infection antiserum. In agreement, after administration of immunoglobulins, the patient cleared the infection.

          Conclusions

          Intestinal enteroid cultures provide a relevant system to evaluate antivirals and the neutralizing potential of immunoglobulins. We successfully treated a chronically infected patient with immunoglobulins, despite varying results reported by others. This case study provides in-depth, multifaceted exploration of norovirus treatment that can be used as a guidance for further research towards norovirus treatments.

          Abstract

          An immunocompromised patient with a chronic norovirus infection was successfully treated with nasoduodenally administered immunoglobulins while nitazoxanide, ribavirin, and interferon alpha-2a had no effect. In vitro enteroid cultures confirmed GII.4 norovirus neutralization by immunoglobulins.

          Related collections

          Most cited references42

          • Record: found
          • Abstract: found
          • Article: found
          Is Open Access

          Trimmomatic: a flexible trimmer for Illumina sequence data

          Motivation: Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data. Results: The value of NGS read preprocessing is demonstrated for both reference-based and reference-free tasks. Trimmomatic is shown to produce output that is at least competitive with, and in many cases superior to, that produced by other tools, in all scenarios tested. Availability and implementation: Trimmomatic is licensed under GPL V3. It is cross-platform (Java 1.5+ required) and available at http://www.usadellab.org/cms/index.php?page=trimmomatic Contact: usadel@bio1.rwth-aachen.de Supplementary information: Supplementary data are available at Bioinformatics online.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Fast and sensitive protein alignment using DIAMOND.

            The alignment of sequencing reads against a protein reference database is a major computational bottleneck in metagenomics and data-intensive evolutionary projects. Although recent tools offer improved performance over the gold standard BLASTX, they exhibit only a modest speedup or low sensitivity. We introduce DIAMOND, an open-source algorithm based on double indexing that is 20,000 times faster than BLASTX on short reads and has a similar degree of sensitivity.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: found
              Is Open Access

              IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

              Abstract IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software.
                Bookmark

                Author and article information

                Contributors
                Journal
                J Infect Dis
                J Infect Dis
                jid
                The Journal of Infectious Diseases
                Oxford University Press (US )
                0022-1899
                1537-6613
                15 November 2022
                07 March 2022
                07 March 2022
                : 226
                : 10
                : 1781-1789
                Affiliations
                Department of Viroscience, Erasmus University Medical Center , Rotterdam, The Netherlands
                Department of Internal Medicine, Erasmus University Medical Center , Rotterdam, the Netherlands
                Department of Immunology, Erasmus University Medical Center , Rotterdam, the Netherlands
                Department of Viroscience, Erasmus University Medical Center , Rotterdam, The Netherlands
                Department of Viroscience, Erasmus University Medical Center , Rotterdam, The Netherlands
                Department of Viroscience, Erasmus University Medical Center , Rotterdam, The Netherlands
                Department of Viroscience, Erasmus University Medical Center , Rotterdam, The Netherlands
                Department of Viroscience, Erasmus University Medical Center , Rotterdam, The Netherlands
                Department of Molecular Virology and Microbiology, Baylor College of Medicine , Houston, Texas, USA
                Department of Molecular Virology and Microbiology, Baylor College of Medicine , Houston, Texas, USA
                Department of Medicine, Baylor College of Medicine , Houston, Texas, USA
                Department of Viroscience, Erasmus University Medical Center , Rotterdam, The Netherlands
                Department of Viroscience, Erasmus University Medical Center , Rotterdam, The Netherlands
                Author notes
                Correspondence: Miranda de Graaf, PhD, Erasmus University Medical Center, PO Box 1738, 3000 DR Rotterdam, the Netherlands ( m.degraaf@ 123456erasmusmc.nl ).

                J. J. A. v. K. and V. A. S. H. D. contributed equally.

                Potential conflicts of interest. All authors: No reported conflicts of interest. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed.

                Article
                jiac085
                10.1093/infdis/jiac085
                9650502
                35255136
                aa849913-ba00-40d1-9998-7d096a6da720
                © The Author(s) 2022. Published by Oxford University Press for the Infectious Diseases Society of America.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence ( https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

                History
                : 22 October 2021
                : 04 March 2022
                : 01 March 2022
                : 31 March 2022
                Page count
                Pages: 9
                Funding
                Funded by: Erasmus Medical Center, DOI 10.13039/501100003061;
                Funded by: European Union’s Horizon 2020 Research and Innovation Program;
                Award ID: 643476
                Funded by: National Institutes of Health, DOI 10.13039/100000002;
                Award ID: PO1 AI057788
                Categories
                Major Article
                AcademicSubjects/MED00290

                Infectious disease & Microbiology
                immunocompromised,ribavirin,nitazoxanide,interferon alpha-2a,immunoglobulins,norovirus,next-generation sequencing,vircapseq,enteroids,human intestinal organoids

                Comments

                Comment on this article