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      Feature replacement methods enable reliable home video analysis for machine learning detection of autism

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          Abstract

          Autism Spectrum Disorder is a neuropsychiatric condition affecting 53 million children worldwide and for which early diagnosis is critical to the outcome of behavior therapies. Machine learning applied to features manually extracted from readily accessible videos (e.g., from smartphones) has the potential to scale this diagnostic process. However, nearly unavoidable variability in video quality can lead to missing features that degrade algorithm performance. To manage this uncertainty, we evaluated the impact of missing values and feature imputation methods on two previously published autism detection classifiers, trained on standard-of-care instrument scoresheets and tested on ratings of 140 children videos from YouTube. We compare the baseline method of listwise deletion to classic univariate and multivariate techniques. We also introduce a feature replacement method that, based on a score, selects a feature from an expanded dataset to fill-in the missing value. The replacement feature selected can be identical for all records (general) or automatically adjusted to the record considered (dynamic). Our results show that general and dynamic feature replacement methods achieve a higher performance than classic univariate and multivariate methods, supporting the hypothesis that algorithmic management can maintain the fidelity of video-based diagnostics in the face of missing values and variable video quality.

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          Re-epithelialization and immune cell behaviour in an ex vivo human skin model

          A large body of literature is available on wound healing in humans. Nonetheless, a standardized ex vivo wound model without disruption of the dermal compartment has not been put forward with compelling justification. Here, we present a novel wound model based on application of negative pressure and its effects for epidermal regeneration and immune cell behaviour. Importantly, the basement membrane remained intact after blister roof removal and keratinocytes were absent in the wounded area. Upon six days of culture, the wound was covered with one to three-cell thick K14+Ki67+ keratinocyte layers, indicating that proliferation and migration were involved in wound closure. After eight to twelve days, a multi-layered epidermis was formed expressing epidermal differentiation markers (K10, filaggrin, DSG-1, CDSN). Investigations about immune cell-specific manners revealed more T cells in the blister roof epidermis compared to normal epidermis. We identified several cell populations in blister roof epidermis and suction blister fluid that are absent in normal epidermis which correlated with their decrease in the dermis, indicating a dermal efflux upon negative pressure. Together, our model recapitulates the main features of epithelial wound regeneration, and can be applied for testing wound healing therapies and investigating underlying mechanisms.
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            Ridge Regression: Biased Estimation for Nonorthogonal Problems

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              Induction of decision trees

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                Author and article information

                Contributors
                dpwall@stanford.edu
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                4 December 2020
                4 December 2020
                2020
                : 10
                : 21245
                Affiliations
                [1 ]GRID grid.168010.e, ISNI 0000000419368956, Department of Pediatrics, , Stanford University, ; Palo Alto, CA 94305 USA
                [2 ]GRID grid.168010.e, ISNI 0000000419368956, Department of Bioengineering, , Stanford University, ; Palo Alto, CA 94305 USA
                [3 ]GRID grid.168010.e, ISNI 0000000419368956, Department of Computer Science, , Stanford University, ; Palo Alto, CA 94305 USA
                [4 ]GRID grid.168010.e, ISNI 0000000419368956, Department of Biomedical Data Science, , Stanford University, ; Palo Alto, CA 94305 USA
                [5 ]GRID grid.168010.e, ISNI 0000000419368956, Department of Psychiatry and Behavioral Sciences (by courtesy), , Stanford University, ; Palo Alto, CA 94305 USA
                Article
                76874
                10.1038/s41598-020-76874-w
                7719177
                33277527
                a2ab1fed-7126-4bbf-bb27-efa960d617b3
                © The Author(s) 2020

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 18 August 2020
                : 2 November 2020
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: 1R21HD091500-01
                Funded by: FundRef http://dx.doi.org/10.13039/100006792, Hartwell Foundation;
                Funded by: FundRef http://dx.doi.org/10.13039/100000008, David and Lucile Packard Foundation;
                Award ID: Special Projects Grant
                Funded by: Beckman Center for Molecular and Genetic Medicine
                Funded by: FundRef http://dx.doi.org/10.13039/100001062, Wallace H. Coulter Foundationv;
                Award ID: Coulter Endowment Translational Research Grant
                Funded by: Stanford Innovation Accelerator Pilot Program
                Award ID: Spectrum Pilot Program
                Funded by: Stanford's Precision Health and Integrated Diagnostics Center (PHIND)
                Funded by: FundRef http://dx.doi.org/10.13039/100014373, Wu Tsai Neurosciences Institute, Stanford University;
                Award ID: Translate Program
                Funded by: Spark Program in Translational Research
                Funded by: Stanford's Institute of Human Centered Artificial Intelligence
                Funded by: FundRef http://dx.doi.org/10.13039/100011223, Weston Havens Foundation;
                Funded by: Philanthropic support from Peter Sullivan
                Funded by: Stanford Interdisciplinary Graduate Fellowship (SIGF)
                Funded by: Walter V. and Idun Berry Postdoctoral Fellowship Program
                Award ID: Berry Fellowship
                Categories
                Article
                Custom metadata
                © The Author(s) 2020

                Uncategorized
                machine learning,autism spectrum disorders,paediatric research
                Uncategorized
                machine learning, autism spectrum disorders, paediatric research

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