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      Basement membranes are crucial for proper olfactory placode shape, position and boundary with the brain, and for olfactory axon development

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          Abstract

          Despite recent progress, the complex roles played by the extracellular matrix in development and disease are still far from being fully understood. Here, we took advantage of the zebrafish sly mutation which affects Laminin γ1, a major component of basement membranes, to explore its role in the development of the olfactory system. Following a detailed characterisation of Laminin distribution in the developing olfactory circuit, we analysed basement membrane integrity, olfactory placode and brain morphogenesis, and olfactory axon development in sly mutants, using a combination of immunochemistry, electron microscopy and quantitative live imaging of cell movements and axon behaviours. Our results point to an original and dual contribution of Laminin γ1-dependent basement membranes in organising the border between the olfactory placode and the adjacent brain: they maintain placode shape and position in the face of major brain morphogenetic movements, they establish a robust physical barrier between the two tissues while at the same time allowing the local entry of the sensory axons into the brain and their navigation towards the olfactory bulb. This work thus identifies key roles of Laminin γ1-dependent basement membranes in neuronal tissue morphogenesis and axon development in vivo.

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          Array programming with NumPy

          Array programming provides a powerful, compact and expressive syntax for accessing, manipulating and operating on data in vectors, matrices and higher-dimensional arrays. NumPy is the primary array programming library for the Python language. It has an essential role in research analysis pipelines in fields as diverse as physics, chemistry, astronomy, geoscience, biology, psychology, materials science, engineering, finance and economics. For example, in astronomy, NumPy was an important part of the software stack used in the discovery of gravitational waves 1 and in the first imaging of a black hole 2 . Here we review how a few fundamental array concepts lead to a simple and powerful programming paradigm for organizing, exploring and analysing scientific data. NumPy is the foundation upon which the scientific Python ecosystem is constructed. It is so pervasive that several projects, targeting audiences with specialized needs, have developed their own NumPy-like interfaces and array objects. Owing to its central position in the ecosystem, NumPy increasingly acts as an interoperability layer between such array computation libraries and, together with its application programming interface (API), provides a flexible framework to support the next decade of scientific and industrial analysis.
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            The extracellular matrix as a multitasking player in disease

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              Shaping cells and organs in Drosophila by opposing roles of fat body-secreted Collagen IV and perlecan.

              Basement membranes (BMs) are resilient polymer structures that surround organs in all animals. Tissues, however, undergo extensive morphological changes during development. It is not known whether the assembly of BM components plays an active morphogenetic role. To study in vivo the biogenesis and assembly of Collagen IV, the main constituent of BMs, we used a GFP-based RNAi method (iGFPi) designed to knock down any GFP-trapped protein in Drosophila. We found with this method that Collagen IV is synthesized by the fat body, secreted to the hemolymph (insect blood), and continuously incorporated into the BMs of the larva. We also show that incorporation of Collagen IV determines organ shape, first by mechanically constricting cells and second through recruitment of Perlecan, which counters constriction by Collagen IV. Our results uncover incorporation of Collagen IV and Perlecan into BMs as a major determinant of organ shape and animal form. Copyright © 2011 Elsevier Inc. All rights reserved.
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                Author and article information

                Contributors
                Role: Reviewing Editor
                Role: Senior Editor
                Journal
                eLife
                Elife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                23 December 2024
                2024
                : 12
                : RP92004
                Affiliations
                [1 ] Sorbonne Université, Centre National de la Recherche Scientifique (CNRS UMR7622), Institut de Biologie Paris-Seine (IBPS), Developmental Biology Laboratory ( https://ror.org/024hnwe62) Paris France
                [2 ] Sorbonne Université, Centre National de la Recherche Scientifique (CNRS UMR8246), Inserm U1130, Institut de Biologie Paris-Seine (IBPS), Neuroscience Paris Seine (NPS) ( https://ror.org/02sps6z09) Paris France
                [3 ] Imaging Facility, Institut de Biologie Paris-Seine (IBPS) ( https://ror.org/01c2cjg59) Paris France
                [4 ] Sorbonne Université, Centre National de la Recherche Scientifique (CNRS UMR8256), Institut de Biologie Paris-Seine (IBPS), Adaptation Biologique et Vieillissement ( https://ror.org/02y2c2646) Paris France
                [5 ] Sorbonne Université, INSERM, CNRS, Institut de la Vision ( https://ror.org/02en5vm52) Paris France
                [6 ] Institut National de la Santé et de la Recherche Médicale (INSERM) ( https://ror.org/02vjkv261) Paris France
                University of Sheffield ( https://ror.org/05krs5044) United Kingdom
                Max Planck Institute for Heart and Lung Research ( https://ror.org/0165r2y73) Germany
                University of Sheffield United Kingdom
                Institut de Biologie Paris-Seine Paris France
                Institut de Biologie Paris-Seine Paris France
                Institut de Biologie Paris-Seine Paris France
                Institut de Biologie Paris-Seine Paris France
                Institut de Biologie Paris-Seine Paris France
                Institut de Biologie Paris-Seine Paris France
                Institut de Biologie Paris-Seine Paris France
                Institut de Biologie Paris-Seine Paris France
                Institut de la Vision Paris France
                Institut de la Vision Paris France
                Institut de la Vision Paris France
                Institut de Biologie Paris-Seine Paris France
                Institut de Biologie Paris-Seine Paris France
                Author information
                https://orcid.org/0000-0003-3935-6971
                https://orcid.org/0000-0002-3243-7018
                https://orcid.org/0000-0001-8551-2846
                https://orcid.org/0000-0002-9054-2641
                https://orcid.org/0000-0003-1884-7704
                Article
                92004
                10.7554/eLife.92004
                11666240
                39713923
                995988e1-d358-4d85-ab3c-6903fd4937c8
                © 2023, Tignard et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 18 September 2023
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: R01-DC-017989
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001665, Agence Nationale de la Recherche;
                Award ID: ANR-17-CE13-0009-01
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001665, Agence Nationale de la Recherche;
                Award ID: ANR-23-CE13-0025
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Developmental Biology
                Custom metadata
                Laminin gamma1-dependent basement membranes are required for multiple aspects of olfactory system development in zebrafish, including the maintenance of placode tissue shape and the growth of the olfactory axons.
                prc

                Life sciences
                basement membrane,extracellular matrix,morphogenesis,axon,placode,olfactory,zebrafish
                Life sciences
                basement membrane, extracellular matrix, morphogenesis, axon, placode, olfactory, zebrafish

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