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      A comprehensive study on electroencephalography and magnetoencephalography sensitivity to cortical and subcortical sources

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          Abstract

          Signal‐to‐noise ratio (SNR) maps are a good way to visualize electroencephalography (EEG) and magnetoencephalography (MEG) sensitivity. SNR maps extend the knowledge about the modulation of EEG and MEG signals by source locations and orientations and can therefore help to better understand and interpret measured signals as well as source reconstruction results thereof. Our work has two main objectives. First, we investigated the accuracy and reliability of EEG and MEG finite element method (FEM)‐based sensitivity maps for three different head models, namely an isotropic three and four‐compartment and an anisotropic six‐compartment head model. As a result, we found that ignoring the cerebrospinal fluid leads to an overestimation of EEG SNR values. Second, we examined and compared EEG and MEG SNR mappings for both cortical and subcortical sources and their modulation by source location and orientation. Our results for cortical sources show that EEG sensitivity is higher for radial and deep sources and MEG for tangential ones, which are the majority of sources. As to the subcortical sources, we found that deep sources with sufficient tangential source orientation are recordable by the MEG. Our work, which represents the first comprehensive study where cortical and subcortical sources are considered in highly detailed FEM‐based EEG and MEG SNR mappings, sheds a new light on the sensitivity of EEG and MEG and might influence the decision of brain researchers or clinicians in their choice of the best modality for their experiment or diagnostics, respectively.

          Abstract

          Signal‐to‐noise ratio (SNR) maps are a good way to visualize electroencephalography (EEG) and magnetoencephalography (MEG) sensitivity. In our work, we computed EEG and MEG sensitivity maps in a six‐compartment anisotropic head model. We show that ignoring the cerebrospinal fluid leads to an overestimation of EEG SNR values. For cortical sources, we found that radial and deep are more visible to EEG, tangential (the majority) more to MEG. Finally, our results show that MEG is not fully insensitive to subcortical sources.

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          FieldTrip: Open Source Software for Advanced Analysis of MEG, EEG, and Invasive Electrophysiological Data

          This paper describes FieldTrip, an open source software package that we developed for the analysis of MEG, EEG, and other electrophysiological data. The software is implemented as a MATLAB toolbox and includes a complete set of consistent and user-friendly high-level functions that allow experimental neuroscientists to analyze experimental data. It includes algorithms for simple and advanced analysis, such as time-frequency analysis using multitapers, source reconstruction using dipoles, distributed sources and beamformers, connectivity analysis, and nonparametric statistical permutation tests at the channel and source level. The implementation as toolbox allows the user to perform elaborate and structured analyses of large data sets using the MATLAB command line and batch scripting. Furthermore, users and developers can easily extend the functionality and implement new algorithms. The modular design facilitates the reuse in other software packages.
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            Magnetoencephalography—theory, instrumentation, and applications to noninvasive studies of the working human brain

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              The PREP pipeline: standardized preprocessing for large-scale EEG analysis

              The technology to collect brain imaging and physiological measures has become portable and ubiquitous, opening the possibility of large-scale analysis of real-world human imaging. By its nature, such data is large and complex, making automated processing essential. This paper shows how lack of attention to the very early stages of an EEG preprocessing pipeline can reduce the signal-to-noise ratio and introduce unwanted artifacts into the data, particularly for computations done in single precision. We demonstrate that ordinary average referencing improves the signal-to-noise ratio, but that noisy channels can contaminate the results. We also show that identification of noisy channels depends on the reference and examine the complex interaction of filtering, noisy channel identification, and referencing. We introduce a multi-stage robust referencing scheme to deal with the noisy channel-reference interaction. We propose a standardized early-stage EEG processing pipeline (PREP) and discuss the application of the pipeline to more than 600 EEG datasets. The pipeline includes an automatically generated report for each dataset processed. Users can download the PREP pipeline as a freely available MATLAB library from http://eegstudy.org/prepcode.
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                Author and article information

                Contributors
                mariacarla.piastra@donders.ru.nl
                Journal
                Hum Brain Mapp
                Hum Brain Mapp
                10.1002/(ISSN)1097-0193
                HBM
                Human Brain Mapping
                John Wiley & Sons, Inc. (Hoboken, USA )
                1065-9471
                1097-0193
                06 November 2020
                March 2021
                : 42
                : 4 ( doiID: 10.1002/hbm.v42.4 )
                : 978-992
                Affiliations
                [ 1 ] Institute for Biomagnetism and Biosignalanalysis University of Münster Münster Germany
                [ 2 ] Institute for Computational and Applied Mathematics University of Münster Münster Germany
                [ 3 ] Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen Medical Center Nijmegen The Netherlands
                [ 4 ] Institute of Electrical and Biomedical Engineering, University for Health Sciences Medical Informatics and Technology Hall in Tirol Austria
                [ 5 ] Inria Sophia Antipolis‐Mediterranée Biot France
                [ 6 ] Université Côte d'Azur Nice France
                [ 7 ] Cluster of Excellence EXC 1003, Cells in Motion, CiM, University of Münster Münster Germany
                [ 8 ] Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster Münster Germany
                Author notes
                [*] [* ] Correspondence

                Maria Carla Piastra, Cognitive Neuroscience, Donders Institute for Brain, Cognition and Behaviour, Radboud, University Nijmegen Medical Center, Nijmegen, The Netherlands. Email: mariacarla.piastra@ 123456donders.ru.nl

                Author information
                https://orcid.org/0000-0001-8339-0355
                https://orcid.org/0000-0003-3597-4203
                Article
                HBM25272
                10.1002/hbm.25272
                7856654
                33156569
                938254d6-0718-4405-b104-a718e9c856d2
                © 2020 The Authors. Human Brain Mapping published by Wiley Periodicals LLC.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 25 March 2020
                : 19 October 2020
                : 21 October 2020
                Page count
                Figures: 9, Tables: 2, Pages: 15, Words: 12141
                Funding
                Funded by: Austrian Wissenschaftsfonds I 3790‐B27 Childbrain, Marie Curie Innovative Training Network: 641652 CoBCoM‐Computational Brain Connectivity Mapping, ERC Advanced
                Award ID: 694665
                Funded by: Deutsche Forschungsgemeinschaft WO1425/7‐1 SPP: 1665
                Award ID: WO1425/5‐2
                Funded by: Deutscher Akademischer Austauschdienst , open-funder-registry 10.13039/501100001655;
                Award ID: 57523877
                Categories
                Research Article
                Research Articles
                Custom metadata
                2.0
                March 2021
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.9.7 mode:remove_FC converted:03.02.2021

                Neurology
                electroencephalography,finite element method,magnetoencephalography,sensitivity map,signal‐to‐noise ratio,subcortical sources,volume conduction modeling

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