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      Mitochondrial Protein Synthesis Adapts to Influx of Nuclear-Encoded Protein

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          Summary

          Mitochondrial ribosomes translate membrane integral core subunits of the oxidative phosphorylation system encoded by mtDNA. These translation products associate with nuclear-encoded, imported proteins to form enzyme complexes that produce ATP. Here, we show that human mitochondrial ribosomes display translational plasticity to cope with the supply of imported nuclear-encoded subunits. Ribosomes expressing mitochondrial-encoded COX1 mRNA selectively engage with cytochrome c oxidase assembly factors in the inner membrane. Assembly defects of the cytochrome c oxidase arrest mitochondrial translation in a ribosome nascent chain complex with a partially membrane-inserted COX1 translation product. This complex represents a primed state of the translation product that can be retrieved for assembly. These findings establish a mammalian translational plasticity pathway in mitochondria that enables adaptation of mitochondrial protein synthesis to the influx of nuclear-encoded subunits.

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          Highlights

          • Mitochondrial ribosomes display translational plasticity

          • COX1 translation in mitochondria is stalled in the absence of nuclear-encoded COX4

          • A ribosome nascent chain complex of COX1 is a primed state for complex IV assembly

          • MITRAC regulates translation via COX1 ribosome nascent chain complexes interaction

          Abstract

          Mitochondrial translation displays plasticity, allowing the adaptation to the availability of a nuclear-encoded complex subunit.

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          Most cited references44

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          Ribosome. The structure of the human mitochondrial ribosome.

          The highly divergent ribosomes of human mitochondria (mitoribosomes) synthesize 13 essential proteins of oxidative phosphorylation complexes. We have determined the structure of the intact mitoribosome to 3.5 angstrom resolution by means of single-particle electron cryogenic microscopy. It reveals 80 extensively interconnected proteins, 36 of which are specific to mitochondria, and three ribosomal RNA molecules. The head domain of the small subunit, particularly the messenger (mRNA) channel, is highly remodeled. Many intersubunit bridges are specific to the mitoribosome, which adopts conformations involving ratcheting or rolling of the small subunit that are distinct from those seen in bacteria or eukaryotes. An intrinsic guanosine triphosphatase mediates a contact between the head and central protuberance. The structure provides a reference for analysis of mutations that cause severe pathologies and for future drug design. Copyright © 2015, American Association for the Advancement of Science.
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            MicroRNA directly enhances mitochondrial translation during muscle differentiation.

            MicroRNAs are well known to mediate translational repression and mRNA degradation in the cytoplasm. Various microRNAs have also been detected in membrane-compartmentalized organelles, but the functional significance has remained elusive. Here, we report that miR-1, a microRNA specifically induced during myogenesis, efficiently enters the mitochondria where it unexpectedly stimulates, rather than represses, the translation of specific mitochondrial genome-encoded transcripts. We show that this positive effect requires specific miR:mRNA base-pairing and Ago2, but not its functional partner GW182, which is excluded from the mitochondria. We provide evidence for the direct action of Ago2 in mitochondrial translation by crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq), functional rescue with mitochondria-targeted Ago2, and selective inhibition of the microRNA machinery in the cytoplasm. These findings unveil a positive function of microRNA in mitochondrial translation and suggest a highly coordinated myogenic program via miR-1-mediated translational stimulation in the mitochondria and repression in the cytoplasm. Copyright © 2014 Elsevier Inc. All rights reserved.
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              Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.

              Mammalian mitochondrial ribosomes (mitoribosomes) synthesize mitochondrially encoded membrane proteins that are critical for mitochondrial function. Here we present the complete atomic structure of the porcine 55S mitoribosome at 3.8 angstrom resolution by cryo-electron microscopy and chemical cross-linking/mass spectrometry. The structure of the 28S subunit in the complex was resolved at 3.6 angstrom resolution by focused alignment, which allowed building of a detailed atomic structure including all of its 15 mitoribosomal-specific proteins. The structure reveals the intersubunit contacts in the 55S mitoribosome, the molecular architecture of the mitoribosomal messenger RNA (mRNA) binding channel and its interaction with transfer RNAs, and provides insight into the highly specialized mechanism of mRNA recruitment to the 28S subunit. Furthermore, the structure contributes to a mechanistic understanding of aminoglycoside ototoxicity.
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                Author and article information

                Contributors
                Journal
                Cell
                Cell
                Cell
                Cell Press
                0092-8674
                1097-4172
                06 October 2016
                06 October 2016
                : 167
                : 2
                : 471-483.e10
                Affiliations
                [1 ]Department of Cellular Biochemistry, University Medical Centre Göttingen, GZMB, 37073 Göttingen, Germany
                [2 ]Department of Biochemistry and Functional Proteomics, Faculty of Biology, University Freiburg, 79104 Freiburg, Germany
                [3 ]BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg, Germany
                [4 ]Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany
                Author notes
                [5]

                Lead Contact

                Article
                S0092-8674(16)31231-4
                10.1016/j.cell.2016.09.003
                5055049
                27693358
                9025de5c-dc6e-47d8-9c86-d62c3d0a3b9c
                © 2016 The Author(s)

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 18 April 2016
                : 1 August 2016
                : 30 August 2016
                Categories
                Article

                Cell biology
                mitochondrial translation,cytochrome c oxidase,assembly,mitrac,mitochondrial ribosome,cox1,c12orf62,translation regulation,oxphos,translational plasticity

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