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      Host immune response mediates changes in cagA copy number and virulence potential of Helicobacter pylori

      research-article
      a , b , c , d , c , a , d
      Gut Microbes
      Taylor & Francis
      Helicobacter pylori, cagA, cagY, virulence, immune response

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          ABSTRACT

          Helicobacter pylori is the major risk factor for gastric cancer. H. pylori harboring the type IV secretion system (T4SS) and its effector CagA encoded on the cag pathogenicity Island ( cagPAI) increases the risk. H. pylori PMSS1 has a multi- cagA genotype, modulating cagA copy number dynamically from zero to four copies. To examine the effect of the immune response on cagA copy number change, we utilized a mouse model with different immune status. PMSS1 recovered from Rag1 −/− mice, lacking functional T or B cells, retained more cagA copies. PMSS1 recovered from Il10 −/− mice, showing intense inflammation, had fewer cagA copies compared to those recovered from wild-type mice. Moreover, cagA copy number of PMSS1 recovered from wild-type and Il10 −/− mice was positively correlated with the capacity to induce IL-8 secretion at four weeks of infection. Since recombination in cagY influences T4SS function, including CagA translocation and IL-8 induction, we constructed a multiple linear regression model to predict H. pylori-induced IL-8 expression based on cagA copy number and cagY recombination status; H. pylori induces more IL-8 secretion when the strain has more cagA copies and intact cagY. This study shows that H. pylori PMSS1 in mice with less intense immune response possess higher cagA copy number than those infected in mice with more intense immune response and thus the multi- cagA genotype, along with cagY recombination, functions as an immune-sensitive regulator of H. pylori virulence.

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          Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

          The two most commonly used methods to analyze data from real-time, quantitative PCR experiments are absolute quantification and relative quantification. Absolute quantification determines the input copy number, usually by relating the PCR signal to a standard curve. Relative quantification relates the PCR signal of the target transcript in a treatment group to that of another sample such as an untreated control. The 2(-Delta Delta C(T)) method is a convenient way to analyze the relative changes in gene expression from real-time quantitative PCR experiments. The purpose of this report is to present the derivation, assumptions, and applications of the 2(-Delta Delta C(T)) method. In addition, we present the derivation and applications of two variations of the 2(-Delta Delta C(T)) method that may be useful in the analysis of real-time, quantitative PCR data. Copyright 2001 Elsevier Science (USA).
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            Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012.

            Estimates of the worldwide incidence and mortality from 27 major cancers and for all cancers combined for 2012 are now available in the GLOBOCAN series of the International Agency for Research on Cancer. We review the sources and methods used in compiling the national cancer incidence and mortality estimates, and briefly describe the key results by cancer site and in 20 large "areas" of the world. Overall, there were 14.1 million new cases and 8.2 million deaths in 2012. The most commonly diagnosed cancers were lung (1.82 million), breast (1.67 million), and colorectal (1.36 million); the most common causes of cancer death were lung cancer (1.6 million deaths), liver cancer (745,000 deaths), and stomach cancer (723,000 deaths). © 2014 UICC.
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              Analyzing real-time PCR data by the comparative CT method

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                Author and article information

                Journal
                Gut Microbes
                Gut Microbes
                Gut Microbes
                Taylor & Francis
                1949-0976
                1949-0984
                15 March 2022
                2022
                15 March 2022
                : 14
                : 1
                : 2044721
                Affiliations
                [a ]Department of Oral Biology, Oral Science Research Center, Department of Applied Life Science, The Graduate School, BK21 Four Project, Yonsei University College of Dentistry; , Seoul, Republic of Korea
                [b ]Department of Oral Biochemistry, School of Dentistry, Jeonbuk National University; , Jeonju, Republic of Korea
                [c ]Center for Immunology and Infectious Diseases; Departments of Medicine and of Microbiology and Immunology, School of Medicine; University of California Davis; , Davis, CA, USA
                [d ]Affiliated Stomatology Hospital of Guangzhou Medical University, Guangdong Engineering Research Center of Oral Restoration and Reconstruction, Guangzhou Key Laboratory of Basic and Applied Research of Oral Regenerative Medicine; , Guangzhou, Guangdong, China
                Author notes
                CONTACT Hanfu Su hanfusu@ 123456qq.com
                Jeong-Heon Cha jcha@ 123456yuhs.ac Department of Oral Biology, Oral Science Research Center, Department of Applied Life Science, The Graduate School, BK21 Four Project, Yonsei University College of Dentistry; , Seoul, Republic of Korea
                Author information
                https://orcid.org/0000-0001-6144-6899
                Article
                2044721
                10.1080/19490976.2022.2044721
                8928821
                35289715
                848ab51c-1de3-409b-aa31-f9758021a083
                © 2022 The Author(s). Published with license by Taylor & Francis Group, LLC.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                Page count
                Figures: 5, Tables: 2, References: 81, Pages: 1
                Categories
                Research Article
                Research Paper

                Microbiology & Virology
                helicobacter pylori,caga,cagy,virulence,immune response
                Microbiology & Virology
                helicobacter pylori, caga, cagy, virulence, immune response

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