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      Mushroom‐shaped structures formed in Acinetobacter baumannii biofilms grown in a roller bioreactor are associated with quorum sensing–dependent Csu‐pilus assembly

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          Summary

          There is currently a need to develop simple biofilm models that facilitate investigation of the architecture/biology of mature bacterial biofilms in a consistent/standardized manner given their environmental and clinical importance and the need for new anti‐biofilm interventions. This study introduces a novel biofilm culture system termed the rolling biofilm bioreactor (RBB). This easily operated system allows adherent microbial cells to be repeatedly exposed to air/solid/liquid interfaces optimizing biofilm growth. The RBB was exploited to investigate biofilm formation in Acinetobacter baumannii. High levels of A. baumannii biofilm biomass reproducibly accumulate in the RBB and, importantly, undergo a maturation step to form large mushroom‐shaped structures that had not been observed in other models. Based on image analysis of biofilm development and genetic manipulation, we show how N‐acylhomoserine lactone‐dependent quorum sensing (QS) impacts on biofilm differentiation, composition and antibiotic tolerance. Our results indicate that extracellular DNA (eDNA) is a key matrix component in mature Acinetobacter biofilms as the mushroom‐like structures consist of dense cellular masses encased in an eDNA mesh. Moreover, this study reveals the contribution of QS to A. baumannii biofilm differentiation through Csu pilus assembly regulation. Understanding the mechanisms of structural development of mature biofilms helps to identify new biofilm eradication and removal strategies.

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          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            Multisociety Consensus Quality Improvement Revised Consensus Statement for Endovascular Therapy of Acute Ischemic Stroke.

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              A characterization of DNA release in Pseudomonas aeruginosa cultures and biofilms.

              Pseudomonas aeruginosa produces extracellular DNA which functions as a cell-to-cell interconnecting matrix component in biofilms. Comparison of extracellular DNA and chromosomal DNA by the use of polymerase chain reaction and Southern analysis suggested that the extracellular DNA is similar to whole-genome DNA. Evidence that the extracellular DNA in P. aeruginosa biofilms and cultures is generated via lysis of a subpopulation of the bacteria was obtained through experiments where extracellular beta-galactosidase released from lacZ-containing P. aeruginosa strains was assessed. Experiments with the wild type and lasIrhlI, pqsA, pqsL and fliMpilA mutants indicated that the extracellular DNA is generated via a mechanism which is dependent on acyl homoserine lactone and Pseudomonas quinolone signalling, as well as on flagella and type IV pili. Microscopic investigation of flow chamber-grown wild-type P. aeruginosa biofilms stained with different DNA stains suggested that the extracellular DNA is located primarily in the stalks of mushroom-shaped multicellular structures, with a high concentration especially in the outer part of the stalks forming a border between the stalk-forming bacteria and the cap-forming bacteria. Biofilms formed by lasIrhlI, pqsA and fliMpilA mutants contained less extracellular DNA than biofilms formed by the wild type, and the mutant biofilms were more susceptible to treatment with sodium dodecyl sulphate than the wild-type biofilm.
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                Author and article information

                Contributors
                m.romero@nottingham.ac.uk
                Journal
                Environ Microbiol
                Environ Microbiol
                10.1111/(ISSN)1462-2920
                EMI
                Environmental Microbiology
                John Wiley & Sons, Inc. (Hoboken, USA )
                1462-2912
                1462-2920
                30 March 2022
                September 2022
                : 24
                : 9 , Double Special Issue: Microbiomes and Microbial Communities, and Pathogen and Antimicrobial Resistance Ecology ( doiID: 10.1111/emi.v24.9 )
                : 4329-4339
                Affiliations
                [ 1 ] National Biofilms Innovation Centre, Biodiscovery Institute and School of Life Sciences University of Nottingham Nottingham UK
                [ 2 ] Instituto de Investigacion Sanitaria de Santiago de Compostela (IDIS) Santiago de Compostela Spain
                [ 3 ] Sakaeo Crown Prince Hospital Department of Internal Medicine Sa Kaeo Thailand
                [ 4 ] Departamento de Microbioloxía e Parasitoloxía, Facultade de Bioloxía, Edificio CIBUS Universidade de Santiago de Compostela Santiago de Compostela Spain
                Author notes
                [*] [* ] For correspondence. E‐mail m.romero@ 123456nottingham.ac.uk ; Tel. (+44) 01158232027.

                [†]

                These authors contributed equally to this paper.

                Author information
                https://orcid.org/0000-0001-6902-6776
                https://orcid.org/0000-0002-5079-3622
                Article
                EMI15985
                10.1111/1462-2920.15985
                9790458
                35352448
                82811e58-0925-4b20-9ed4-be757297d8fb
                © 2022 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 11 February 2022
                : 03 December 2021
                : 21 March 2022
                Page count
                Figures: 4, Tables: 0, Pages: 11, Words: 7589
                Funding
                Funded by: Biotechnology and Biological Sciences Research Council , doi 10.13039/501100000268;
                Award ID: BB/R012415/1
                Funded by: Consellería de Cultura, Educación e Ordenación Universitaria, Xunta de Galicia , doi 10.13039/501100008425;
                Award ID: IN606B‐2019/010
                Funded by: Wellcome Trust , doi 10.13039/100010269;
                Award ID: Ref. 103884
                Categories
                Research Article
                Special Issue on Pathogen and Antimicrobial Resistance Ecology
                Research Articles
                Custom metadata
                2.0
                September 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.2.3 mode:remove_FC converted:25.12.2022

                Microbiology & Virology
                Microbiology & Virology

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