- Record: found
- Abstract: not found
- Article: not found
Shifting the limits in wheat research and breeding using a fully annotated reference genome
Rudi Appels ,
Kellye Eversole ,
Catherine Feuillet ,
Beat Keller ,
Jane Rogers ,
Nils Stein ,
Curtis J. Pozniak ,
Nils Stein ,
Frédéric Choulet ,
Assaf Distelfeld ,
Kellye Eversole ,
Jesse Poland ,
Jane Rogers ,
Gil Ronen ,
Andrew G. Sharpe ,
Curtis Pozniak ,
Gil Ronen ,
Nils Stein ,
Omer Barad ,
Kobi Baruch ,
Frédéric Choulet ,
Gabriel Keeble-Gagnère ,
Martin Mascher ,
Andrew G. Sharpe ,
Gil Ben-Zvi ,
Ambre-Aurore Josselin ,
Nils Stein ,
Martin Mascher ,
Axel Himmelbach ,
Frédéric Choulet ,
Gabriel Keeble-Gagnère ,
Martin Mascher ,
Jane Rogers ,
François Balfourier ,
Juan Gutierrez-Gonzalez ,
Matthew Hayden ,
Ambre-Aurore Josselin ,
ChuShin Koh ,
Gary Muehlbauer ,
Raj K. Pasam ,
Etienne Paux ,
Curtis J. Pozniak ,
Philippe Rigault ,
Andrew G. Sharpe ,
Josquin Tibbits ,
Vijay Tiwari ,
Frédéric Choulet ,
Gabriel Keeble-Gagnère ,
Martin Mascher ,
Ambre-Aurore Josselin ,
Jane Rogers ,
Manuel Spannagl ,
Frédéric Choulet ,
Daniel Lang ,
Heidrun Gundlach ,
Georg Haberer ,
Gabriel Keeble-Gagnère ,
Klaus F. X. Mayer ,
Danara Ormanbekova ,
Etienne Paux ,
Verena Prade ,
Hana Šimková ,
Thomas Wicker ,
Frédéric Choulet ,
Manuel Spannagl ,
David Swarbreck ,
Hélène Rimbert ,
Marius Felder ,
Nicolas Guilhot ,
Heidrun Gundlach ,
Georg Haberer ,
Gemy Kaithakottil ,
Jens Keilwagen ,
Daniel Lang ,
Philippe Leroy ,
Thomas Lux ,
Klaus F. X. Mayer ,
Sven Twardziok ,
Luca Venturini ,
Rudi Appels ,
Hélène Rimbert ,
Frédéric Choulet ,
Angéla Juhász ,
Gabriel Keeble-Gagnère ,
Frédéric Choulet ,
Manuel Spannagl ,
Daniel Lang ,
Michael Abrouk ,
Georg Haberer ,
Gabriel Keeble-Gagnère ,
Klaus F. X. Mayer ,
Thomas Wicker ,
Frédéric Choulet ,
Thomas Wicker ,
Heidrun Gundlach ,
Daniel Lang ,
Manuel Spannagl ,
Daniel Lang ,
Manuel Spannagl ,
Rudi Appels ,
Iris Fischer ,
Cristobal Uauy ,
Philippa Borrill ,
Ricardo H. Ramirez-Gonzalez ,
Rudi Appels ,
Dominique Arnaud ,
Smahane Chalabi ,
Boulos Chalhoub ,
Frédéric Choulet ,
Aron Cory ,
Raju Datla ,
Mark W. Davey ,
Matthew Hayden ,
John Jacobs ,
Daniel Lang ,
Stephen J. Robinson ,
Manuel Spannagl ,
Burkhard Steuernagel ,
Josquin Tibbits ,
Vijay Tiwari ,
Fred van Ex ,
Brande B. H. Wulff ,
Curtis J. Pozniak ,
Stephen J. Robinson ,
Andrew G. Sharpe ,
Aron Cory ,
Moussa Benhamed ,
Etienne Paux ,
Abdelhafid Bendahmane ,
Lorenzo Concia ,
David Latrasse ,
Jane Rogers ,
John Jacobs ,
Michael Alaux ,
Rudi Appels ,
Jan Bartoš ,
Arnaud Bellec ,
Hélène Berges ,
Jaroslav Doležel ,
Catherine Feuillet ,
Zeev Frenkel ,
Bikram Gill ,
Abraham Korol ,
Thomas Letellier ,
Odd-Arne Olsen ,
Hana Šimková ,
Kuldeep Singh ,
Miroslav Valárik ,
Edwin van der Vossen ,
Sonia Vautrin ,
Song Weining ,
Abraham Korol ,
Zeev Frenkel ,
Tzion Fahima ,
Vladimir Glikson ,
Dina Raats ,
Jane Rogers ,
Vijay Tiwari ,
Bikram Gill ,
Etienne Paux ,
Jesse Poland ,
Jaroslav Doležel ,
Jarmila Číhalíková ,
Hana Šimková ,
Helena Toegelová ,
Jan Vrána ,
Pierre Sourdille ,
Benoit Darrier ,
Rudi Appels ,
Manuel Spannagl ,
Daniel Lang ,
Iris Fischer ,
Danara Ormanbekova ,
Verena Prade ,
Delfina Barabaschi ,
Luigi Cattivelli ,
Pilar Hernandez ,
Sergio Galvez ,
Hikmet Budak ,
Burkhard Steuernagel ,
Jonathan D. G. Jones ,
Kamil Witek ,
Brande B. H. Wulff ,
Guotai Yu ,
Ian Small ,
Joanna Melonek ,
Ruonan Zhou ,
Angéla Juhász ,
Tatiana Belova ,
Rudi Appels ,
Odd-Arne Olsen ,
Kostya Kanyuka ,
Robert King ,
Kirby Nilsen ,
Sean Walkowiak ,
Curtis J. Pozniak ,
Richard Cuthbert ,
Raju Datla ,
Ron Knox ,
Krysta Wiebe ,
Daoquan Xiang ,
Antje Rohde ,
Timothy Golds ,
Jaroslav Doležel ,
Jana Čížková ,
Josquin Tibbits ,
Hikmet Budak ,
Bala Ani Akpinar ,
Sezgi Biyiklioglu ,
Gary Muehlbauer ,
Jesse Poland ,
Liangliang Gao ,
Juan Gutierrez-Gonzalez ,
Amidou N’Daiye ,
Jaroslav Doležel ,
Hana Šimková ,
Jarmila Číhalíková ,
Marie Kubaláková ,
Jan Šafář ,
Jan Vrána ,
Hélène Berges ,
Arnaud Bellec ,
Sonia Vautrin ,
Michael Alaux ,
Françoise Alfama ,
Anne-Françoise Adam-Blondon ,
Raphael Flores ,
Claire Guerche ,
Thomas Letellier ,
Mikaël Loaec ,
Hadi Quesneville ,
Curtis J. Pozniak ,
Andrew G. Sharpe ,
Sean Walkowiak ,
Hikmet Budak ,
Janet Condie ,
Jennifer Ens ,
ChuShin Koh ,
Ron Maclachlan ,
Yifang Tan ,
Thomas Wicker ,
Frédéric Choulet ,
Etienne Paux ,
Adriana Alberti ,
Jean-Marc Aury ,
François Balfourier ,
Valérie Barbe ,
Arnaud Couloux ,
Corinne Cruaud ,
Karine Labadie ,
Sophie Mangenot ,
Patrick Wincker ,
Bikram Gill ,
Gaganpreet Kaur ,
Mingcheng Luo ,
Sunish Sehgal ,
Kuldeep Singh ,
Parveen Chhuneja ,
Om Prakash Gupta ,
Suruchi Jindal ,
Parampreet Kaur ,
Palvi Malik ,
Priti Sharma ,
Bharat Yadav ,
Nagendra K. Singh ,
JitendraP. Khurana ,
Chanderkant Chaudhary ,
Paramjit Khurana ,
Vinod Kumar ,
Ajay Mahato ,
Saloni Mathur ,
Amitha Sevanthi ,
Naveen Sharma ,
Ram Sewak Tomar ,
Jane Rogers ,
John Jacobs ,
Michael Alaux ,
Arnaud Bellec ,
Hélène Berges ,
Jaroslav Doležel ,
Catherine Feuillet ,
Zeev Frenkel ,
Bikram Gill ,
Abraham Korol ,
Edwin van der Vossen ,
Sonia Vautrin ,
Bikram Gill ,
Gaganpreet Kaur ,
Mingcheng Luo ,
Sunish Sehgal ,
Jan Bartoš ,
Kateřina Holušová ,
Ondřej Plíhal ,
Matthew D. Clark ,
Darren Heavens ,
George Kettleborough ,
Jon Wright ,
Miroslav Valárik ,
Michael Abrouk ,
Barbora Balcárková ,
Kateřina Holušová ,
Yuqin Hu ,
Mingcheng Luo ,
Elena Salina ,
Nikolai Ravin ,
Konstantin Skryabin ,
Alexey Beletsky ,
Vitaly Kadnikov ,
Andrey Mardanov ,
Michail Nesterov ,
Andrey Rakitin ,
Ekaterina Sergeeva ,
Hirokazu Handa ,
Hiroyuki Kanamori ,
Satoshi Katagiri ,
Fuminori Kobayashi ,
Shuhei Nasuda ,
Tsuyoshi Tanaka ,
Jianzhong Wu ,
Rudi Appels ,
Matthew Hayden ,
Gabriel Keeble-Gagnère ,
Philippe Rigault ,
Josquin Tibbits ,
Odd-Arne Olsen ,
Tatiana Belova ,
Federica Cattonaro ,
Min Jiumeng ,
Karl Kugler ,
Klaus F. X. Mayer ,
Matthias Pfeifer ,
Simen Sandve ,
Xu Xun ,
Bujie Zhan ,
Hana Šimková ,
Michael Abrouk ,
Jacqueline Batley ,
Philipp E. Bayer ,
David Edwards ,
Satomi Hayashi ,
Helena Toegelová ,
Zuzana Tulpová ,
Paul Visendi ,
Song Weining ,
Licao Cui ,
Xianghong Du ,
Kewei Feng ,
Xiaojun Nie ,
Wei Tong ,
Le Wang ,
Philippa Borrill ,
Heidrun Gundlach ,
Sergio Galvez ,
Gemy Kaithakottil ,
Daniel Lang ,
Thomas Lux ,
Martin Mascher ,
Danara Ormanbekova ,
Verena Prade ,
Ricardo H. Ramirez-Gonzalez ,
Manuel Spannagl ,
Nils Stein ,
Cristobal Uauy ,
Luca Venturini ,
Nils Stein ,
Rudi Appels ,
Kellye Eversole ,
Jane Rogers ,
Philippa Borrill ,
Luigi Cattivelli ,
Frédéric Choulet ,
Pilar Hernandez ,
Kostya Kanyuka ,
Daniel Lang ,
Martin Mascher ,
Kirby Nilsen ,
Etienne Paux ,
Curtis J. Pozniak ,
Ricardo H. Ramirez-Gonzalez ,
Hana Šimková ,
Ian Small ,
Manuel Spannagl ,
David Swarbreck ,
Cristobal Uauy ,
The International Wheat Genome Sequencing Consortium (IWGSC),
IWGSC RefSeq principal investigators:,
IWGSC whole-genome assembly principal investigators:,
Whole-genome sequencing and assembly:,
Hi-C data-based scaffolding:,
Whole-genome assembly quality control and analyses:,
Pseudomolecule assembly:,
RefSeq genome structure and gene analyses:,
Automated annotation:,
Manual gene curation:,
Subgenome comparative analyses:,
Transposable elements:,
Phylogenomic analyses:,
Transcriptome analyses and RNA-seq data:,
Whole-genome methylome:,
Histone mark analyses:,
BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:,
Chromosome LTC mapping and physical mapping quality control:,
RH mapping:,
Optical mapping:,
Recombination analyses:,
Gene family analyses:,
CBF gene family:,
Dehydrin gene family:,
NLR gene family:,
PPR gene family:,
Prolamin gene family:,
WAK gene family:,
Stem solidness (SSt1) QTL team:,
Flowering locus C (FLC) gene team:,
Genome size analysis:,
MicroRNA and tRNA annotation:,
Genetic maps and mapping:,
BAC libraries and chromosome sorting:,
BAC pooling, BAC library repository, and access:,
IWGSC sequence and data repository and access:,
Physical maps and BAC-based sequences:,
1A BAC sequencing and assembly:,
1B BAC sequencing and assembly:,
1D, 4D, and 6D physical mapping:,
2AL physical mapping:,
2AS physical mapping:,
2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:,
3AL physical mapping:,
3DS physical mapping and BAC sequencing and assembly:,
3DL BAC sequencing and assembly:,
4A physical mapping, BAC sequencing, assembly, and annotation:,
5BS BAC sequencing and assembly:,
6B BAC sequencing and assembly:,
7A physical mapping and BAC sequencing:,
7B physical mapping, BAC sequencing, and assembly:,
7DS BAC sequencing and assembly:,
7DL physical mapping and BAC sequencing:,
Figures:,
Manuscript writing team:
August 16 2018
August 16 2018
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Abstract
<p class="first" id="d5095230e45">An annotated reference sequence representing the
hexaploid bread wheat genome in 21
pseudomolecules has been analyzed to identify the distribution and genomic context
of coding and noncoding elements across the A, B, and D subgenomes. With an estimated
coverage of 94% of the genome and containing 107,891 high-confidence gene models,
this assembly enabled the discovery of tissue- and developmental stage-related coexpression
networks by providing a transcriptome atlas representing major stages of wheat development.
Dynamics of complex gene families involved in environmental adaptation and end-use
quality were revealed at subgenome resolution and contextualized to known agronomic
single-gene or quantitative trait loci. This community resource establishes the foundation
for accelerating wheat research and application through improved understanding of
wheat biology and genomics-assisted breeding.
</p>
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