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      Minute Impurities Contribute Significantly to Olfactory Receptor Ligand Studies: Tales from Testing the Vibration Theory

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          Abstract

          Several studies have attempted to test the vibrational hypothesis of odorant receptor activation in behavioral and physiological studies using deuterated compounds as odorants. The results have been mixed. Here, we attempted to test how deuterated compounds activate odorant receptors using calcium imaging of the fruit fly antennal lobe. We found specific activation of one area of the antennal lobe corresponding to inputs from a specific receptor. However, upon more detailed analysis, we discovered that an impurity of 0.0006% ethyl acetate in a chemical sample of benzaldehyde-d 5 was entirely responsible for a sizable odorant-evoked response in Drosophila melanogaster olfactory receptor cells expressing dOr42b. Without gas chromatographic purification within the experimental setup, this impurity would have created a difference in the responses of deuterated and nondeuterated benzaldehyde, suggesting that dOr42b be a vibration sensitive receptor, which we show here not to be the case. Our results point to a broad problem in the literature on use of non-GC-pure compounds to test receptor selectivity, and we suggest how the limitations can be overcome in future studies.

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          Most cited references28

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          Crystal structure of rhodopsin: A G protein-coupled receptor.

          Heterotrimeric guanine nucleotide-binding protein (G protein)-coupled receptors (GPCRs) respond to a variety of different external stimuli and activate G proteins. GPCRs share many structural features, including a bundle of seven transmembrane alpha helices connected by six loops of varying lengths. We determined the structure of rhodopsin from diffraction data extending to 2.8 angstroms resolution. The highly organized structure in the extracellular region, including a conserved disulfide bridge, forms a basis for the arrangement of the seven-helix transmembrane motif. The ground-state chromophore, 11-cis-retinal, holds the transmembrane region of the protein in the inactive conformation. Interactions of the chromophore with a cluster of key residues determine the wavelength of the maximum absorption. Changes in these interactions among rhodopsins facilitate color discrimination. Identification of a set of residues that mediate interactions between the transmembrane helices and the cytoplasmic surface, where G-protein activation occurs, also suggests a possible structural change upon photoactivation.
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            Optimization of a GCaMP calcium indicator for neural activity imaging.

            Genetically encoded calcium indicators (GECIs) are powerful tools for systems neuroscience. Recent efforts in protein engineering have significantly increased the performance of GECIs. The state-of-the art single-wavelength GECI, GCaMP3, has been deployed in a number of model organisms and can reliably detect three or more action potentials in short bursts in several systems in vivo. Through protein structure determination, targeted mutagenesis, high-throughput screening, and a battery of in vitro assays, we have increased the dynamic range of GCaMP3 by severalfold, creating a family of "GCaMP5" sensors. We tested GCaMP5s in several systems: cultured neurons and astrocytes, mouse retina, and in vivo in Caenorhabditis chemosensory neurons, Drosophila larval neuromuscular junction and adult antennal lobe, zebrafish retina and tectum, and mouse visual cortex. Signal-to-noise ratio was improved by at least 2- to 3-fold. In the visual cortex, two GCaMP5 variants detected twice as many visual stimulus-responsive cells as GCaMP3. By combining in vivo imaging with electrophysiology we show that GCaMP5 fluorescence provides a more reliable measure of neuronal activity than its predecessor GCaMP3. GCaMP5 allows more sensitive detection of neural activity in vivo and may find widespread applications for cellular imaging in general.
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              Complementary function and integrated wiring of the evolutionarily distinct Drosophila olfactory subsystems.

              To sense myriad environmental odors, animals have evolved multiple, large families of divergent olfactory receptors. How and why distinct receptor repertoires and their associated circuits are functionally and anatomically integrated is essentially unknown. We have addressed these questions through comprehensive comparative analysis of the Drosophila olfactory subsystems that express the ionotropic receptors (IRs) and odorant receptors (ORs). We identify ligands for most IR neuron classes, revealing their specificity for select amines and acids, which complements the broader tuning of ORs for esters and alcohols. IR and OR sensory neurons exhibit glomerular convergence in segregated, although interconnected, zones of the primary olfactory center, but these circuits are extensively interdigitated in higher brain regions. Consistently, behavioral responses to odors arise from an interplay between IR- and OR-dependent pathways. We integrate knowledge on the different phylogenetic and developmental properties of these receptors and circuits to propose models for the functional contributions and evolution of these distinct olfactory subsystems.
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                Author and article information

                Journal
                eNeuro
                eNeuro
                eneuro
                eneuro
                eNeuro
                eNeuro
                Society for Neuroscience
                2373-2822
                5 June 2017
                19 June 2017
                May-Jun 2017
                : 4
                : 3
                : ENEURO.0070-17.2017
                Affiliations
                [1 ]Neurobiology, University of Konstanz , Konstanz, 78457, Germany
                [2 ]Department of Physics and Center for Mind/Brain Sciences, University of Trento , Povo, TN 38123, Italy
                [3 ]Division of Neuroscience, Biomedical Sciences Research Centre Alexander Fleming , Vari 16672, Greece
                Author notes

                The authors declare no competing financial interests.

                All authors designed research; M.P. and D.M. performed research; M.P., D.M., and C.G.G. analyzed data; C.G.G. wrote the paper.

                M.P. was supported by the EMBO Short-Term Fellowship ASTF 108-2015. Part of this research was funded by DFG grants (Deutsche Forschungsgemeinschaft) and SPP1392 ("Integrative Analysis of Olfaction").

                [*]

                M.P. and D.M. contributed equally to this work.

                Correspondence should be addressed to C. G. Galizia at the above address, E-mail: galizia@ 123456uni.kn .
                Author information
                http://orcid.org/0000-0001-5672-1403
                http://orcid.org/0000-0003-3271-1651
                http://orcid.org/0000-0002-8324-0047
                http://orcid.org/0000-0001-5113-6192
                http://orcid.org/0000-0003-0878-6696
                http://orcid.org/0000-0001-8292-6031
                Article
                eN-NWR-0070-17
                10.1523/ENEURO.0070-17.2017
                5490255
                28670618
                6911a4e9-bb17-428c-aeb2-50abbce144b3
                Copyright © 2017 Paoli et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

                History
                : 4 March 2017
                : 18 May 2017
                : 19 May 2017
                Page count
                Figures: 5, Tables: 0, Equations: 1, References: 41, Pages: 10, Words: 7229
                Funding
                Funded by: EMBO short term fellowship
                Award ID: ASTF 108-2015
                Funded by: DFG SPP1392
                Award ID: SPP1392
                Categories
                8
                8.1
                New Research
                Sensory and Motor Systems
                Custom metadata
                May/June 2017

                deuteration,olfactory receptors,vibration theory
                deuteration, olfactory receptors, vibration theory

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