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      Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

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          Abstract

          Host-associated bacterial communities can function as an important line of defence against pathogens in animals and plants. Empirical evidence and theoretical predictions suggest that species-rich communities are more resistant to pathogen invasions. Yet, the underlying mechanisms are unclear. Here, we experimentally test how the underlying resource competition networks of resident bacterial communities affect invasion resistance to the plant pathogen Ralstonia solanacearum in microcosms and in tomato plant rhizosphere. We find that bipartite resource competition networks are better predictors of invasion resistance compared with resident community diversity. Specifically, communities with a combination of stabilizing configurations (low nestedness and high connectance), and a clear niche overlap with the pathogen, reduce pathogen invasion success, constrain pathogen growth within invaded communities and have lower levels of diseased plants in greenhouse experiments. Bacterial resource competition network characteristics can thus be important in explaining positive diversity–invasion resistance relationships in bacterial rhizosphere communities.

          Abstract

          Species-rich communities are thought to be more resistant to pathogen invasion. Here, Wei et al. show that the resource competition network architecture of root-associated bacterial communities are better predictors of plant pathogen invasion resistance than measures of community diversity.

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          Most cited references49

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          Rhizosphere microbiome assemblage is affected by plant development.

          There is a concerted understanding of the ability of root exudates to influence the structure of rhizosphere microbial communities. However, our knowledge of the connection between plant development, root exudation and microbiome assemblage is limited. Here, we analyzed the structure of the rhizospheric bacterial community associated with Arabidopsis at four time points corresponding to distinct stages of plant development: seedling, vegetative, bolting and flowering. Overall, there were no significant differences in bacterial community structure, but we observed that the microbial community at the seedling stage was distinct from the other developmental time points. At a closer level, phylum such as Acidobacteria, Actinobacteria, Bacteroidetes, Cyanobacteria and specific genera within those phyla followed distinct patterns associated with plant development and root exudation. These results suggested that the plant can select a subset of microbes at different stages of development, presumably for specific functions. Accordingly, metatranscriptomics analysis of the rhizosphere microbiome revealed that 81 unique transcripts were significantly (P<0.05) expressed at different stages of plant development. For instance, genes involved in streptomycin synthesis were significantly induced at bolting and flowering stages, presumably for disease suppression. We surmise that plants secrete blends of compounds and specific phytochemicals in the root exudates that are differentially produced at distinct stages of development to help orchestrate rhizosphere microbiome assemblage.
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            The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

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              Elton Revisited: A Review of Evidence Linking Diversity and Invasibility

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                Author and article information

                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Pub. Group
                2041-1723
                24 September 2015
                2015
                : 6
                : 8413
                Affiliations
                [1 ]Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Nanjing Agricultural University , Weigang 1, Nanjing 210095, China
                [2 ]Imperial College London, Silwood Park Campus , Buckhurst Road, Ascot, Berkshire SL5 7PY, UK
                [3 ]Department of Biology, University of York, Wentworth Way , York YO10 5DD, UK
                [4 ]Institute for Environmental Biology, Ecology & Biodiversity, Utrecht University , Padualaan 8, 3584CH Utrecht, The Netherlands
                Author notes
                [*]

                These authors contributed equally to this work.

                Article
                ncomms9413
                10.1038/ncomms9413
                4598729
                26400552
                66f56ab9-dc97-4318-80bc-bd553ed490ad
                Copyright © 2015, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.

                This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

                History
                : 30 October 2014
                : 19 August 2015
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