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      Multiple lines of evidence supports the two varieties of Halenia elliptica (Gentianaceae) as two species

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          Abstract

          Delimiting species requires multiple sources of evidence. Here, we delimited two varieties of Halenia elliptica (Gentianaceae) using several lines of evidence, including morphological traits and mating system in a sympatric population, phylogenetic relationships based on nrITS and cpDNA (rpl16) data, and complete chloroplast genome sequences. Comparative analysis of 21 morphological traits clearly separates the two varieties of H. elliptica. Examination of the flowering process and pollination treatments indicate that H. elliptica var. grandiflora produces seeds via outcrossing, whereas H. elliptica var. elliptica produces seeds via mixed mating. Furthermore, hand-pollinated hybridization of the two varieties produced no seeds. Observations of pollinators showed that when bees began a pollination bout on H. elliptica var. grandiflora they preferred to continue pollinating this variety; however, when they began a pollination bout on H. elliptica var. elliptica, they showed no preference for either variety. Phylogenetic analysis confirmed the monophyly of H. elliptica, which was further divided into two monophyletic clades corresponding to the two varieties. A large number of variants from the chloroplast genomes reflected remarkable genetic dissimilarities between the two varieties of H. elliptica. We recommend that the two varieties of H. elliptica should be revised as two species ( H. elliptica and H. grandiflora). Our findings indicate that H. elliptica varieties may have split into two separate species due to a shift in mating system, changes in flowering phenology and/or post-pollination reproductive isolation.

          Highlights

          • Two varieties of Halenia elliptica (Gentianaceae) are delimited based on morphology, mating system and molecular tools.

          • All data support that the two varieties of H. elliptica should be revised as two species.

          • Mating system, flowering phenology and post-pollination reproductive isolation could contribute to the speciation event.

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          Most cited references70

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

            Motivation: Phylogenies are increasingly used in all fields of medical and biological research. Moreover, because of the next-generation sequencing revolution, datasets used for conducting phylogenetic analyses grow at an unprecedented pace. RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analyses of large datasets under maximum likelihood. Since the last RAxML paper in 2006, it has been continuously maintained and extended to accommodate the increasingly growing input datasets and to serve the needs of the user community. Results: I present some of the most notable new features and extensions of RAxML, such as a substantial extension of substitution models and supported data types, the introduction of SSE3, AVX and AVX2 vector intrinsics, techniques for reducing the memory requirements of the code and a plethora of operations for conducting post-analyses on sets of trees. In addition, an up-to-date 50-page user manual covering all new RAxML options is available. Availability and implementation: The code is available under GNU GPL at https://github.com/stamatak/standard-RAxML. Contact: alexandros.stamatakis@h-its.org Supplementary information: Supplementary data are available at Bioinformatics online.
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              jModelTest 2: more models, new heuristics and parallel computing.

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                Author and article information

                Contributors
                Journal
                Plant Divers
                Plant Divers
                Plant Diversity
                Kunming Institute of Botany, Chinese Academy of Sciences
                2096-2703
                2468-2659
                23 September 2021
                May 2022
                23 September 2021
                : 44
                : 3
                : 290-299
                Affiliations
                [a ]School of Life Sciences, Yunnan Normal University, Kunming 650092, PR China
                [b ]School of Ecology and Environmental Science & Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, Yunnan University, Kunming 650091, PR China
                [c ]Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining 810001, PR China
                [d ]The Germplasm Bank of Wild Species, Institute of Tibetan Plateau Research at Kunming, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, PR China
                [e ]Yunnan Lijiang Forest Ecosystem National Observation and Research Station, Kunming Institute of Botany, Chinese Academy of Sciences, Lijiang 674100, Yunnan, PR China
                Author notes
                []Corresponding author. Lanhei Road 132, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, PR China.Fax: 8687165223231. duanyw@ 123456mail.kib.ac.cn
                [∗∗ ]Corresponding author. Yuhua District #1, Yunnan Normal University, Kunming, 650092, PR China.Fax: 8687165942599. menglihua@ 123456mails.gucas.ac.cn
                [1]

                The two authors contributed equally to this work.

                Article
                S2468-2659(21)00114-1
                10.1016/j.pld.2021.09.004
                9209875
                35769593
                651da214-f13d-42ae-b1a0-a9bd0a96dad4
                © 2021 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co., Ltd.

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 28 February 2021
                : 3 September 2021
                : 7 September 2021
                Categories
                Research Paper

                halenia elliptica,flowering phenology,mating system,reproductive isolation,monophyly,species delimitation

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