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      New opportunities in plant microbiome engineering for increasing agricultural sustainability under stressful conditions

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          Abstract

          Plant microbiome (or phytomicrobiome) engineering (PME) is an anticipated untapped alternative strategy that could be exploited for plant growth, health and productivity under different environmental conditions. It has been proven that the phytomicrobiome has crucial contributions to plant health, pathogen control and tolerance under drastic environmental (a)biotic constraints. Consistent with plant health and safety, in this article we address the fundamental role of plant microbiome and its insights in plant health and productivity. We also explore the potential of plant microbiome under environmental restrictions and the proposition of improving microbial functions that can be supportive for better plant growth and production. Understanding the crucial role of plant associated microbial communities, we propose how the associated microbial actions could be enhanced to improve plant growth-promoting mechanisms, with a particular emphasis on plant beneficial fungi. Additionally, we suggest the possible plant strategies to adapt to a harsh environment by manipulating plant microbiomes. However, our current understanding of the microbiome is still in its infancy, and the major perturbations, such as anthropocentric actions, are not fully understood. Therefore, this work highlights the importance of manipulating the beneficial plant microbiome to create more sustainable agriculture, particularly under different environmental stressors.

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          Most cited references261

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          Food security: the challenge of feeding 9 billion people.

          Continuing population and consumption growth will mean that the global demand for food will increase for at least another 40 years. Growing competition for land, water, and energy, in addition to the overexploitation of fisheries, will affect our ability to produce food, as will the urgent requirement to reduce the impact of the food system on the environment. The effects of climate change are a further threat. But the world can produce more food and can ensure that it is used more efficiently and equitably. A multifaceted and linked global strategy is needed to ensure sustainable and equitable food security, different components of which are explored here.
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            The rhizosphere microbiome and plant health.

            The diversity of microbes associated with plant roots is enormous, in the order of tens of thousands of species. This complex plant-associated microbial community, also referred to as the second genome of the plant, is crucial for plant health. Recent advances in plant-microbe interactions research revealed that plants are able to shape their rhizosphere microbiome, as evidenced by the fact that different plant species host specific microbial communities when grown on the same soil. In this review, we discuss evidence that upon pathogen or insect attack, plants are able to recruit protective microorganisms, and enhance microbial activity to suppress pathogens in the rhizosphere. A comprehensive understanding of the mechanisms that govern selection and activity of microbial communities by plant roots will provide new opportunities to increase crop production. Copyright © 2012 Elsevier Ltd. All rights reserved.
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              Plant–microbiome interactions: from community assembly to plant health

              Healthy plants host diverse but taxonomically structured communities of microorganisms, the plant microbiota, that colonize every accessible plant tissue. Plant-associated microbiomes confer fitness advantages to the plant host, including growth promotion, nutrient uptake, stress tolerance and resistance to pathogens. In this Review, we explore how plant microbiome research has unravelled the complex network of genetic, biochemical, physical and metabolic interactions among the plant, the associated microbial communities and the environment. We also discuss how those interactions shape the assembly of plant-associated microbiomes and modulate their beneficial traits, such as nutrient acquisition and plant health, in addition to highlighting knowledge gaps and future directions.
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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                15 September 2022
                2022
                : 13
                : 899464
                Affiliations
                [1] 1Department of Plant Pathology, Federal University of Lavras (UFLA) , Lavras, MG, Brazil
                [2] 2Institute of Industrial Biotechnology, Government College University , Lahore, Pakistan
                [3] 3Department of Food Engineering, Faculty of Animal Science and Food Engineering, University of São Paulo (USP) , São Paulo, Brazil
                [4] 4Department of Plant Sciences, Quaid-i-Azam University , Islamabad, Pakistan
                [5] 5Zhejiang Key Laboratory of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University , Hangzhou, China
                [6] 6Department of Biotechnology, Quaid-i-Azam University , Islamabad, Pakistan
                [7] 7Food Engineering Department, Faculty of Food Science and Technology, University of Agricultural Sciences and Veterinary Medicine of Cluj-Napoca , Cluj-Napoca, Romania
                [8] 8Department of Biology, College of Science, Princess Nourah Bint Abdulrahman University , Riyadh, Saudi Arabia
                [9] 9Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, Jouf University , Sakaka, Saudi Arabia
                [10] 10Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo , Morelia, Mexico
                Author notes

                Edited by: Shabir Hussain Wani, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, India

                Reviewed by: Sheikh Mansoor, Sher-e-Kashmir University of Agricultural Sciences and Technology of Jammu, India; Durgesh K. Jaiswal, Savitribai Phule Pune University, India; Rohit Joshi, Institute of Himalayan Bioresource Technology (CSIR), India

                *Correspondence: Gustavo Santoyo, gustavo.santoyo@ 123456umich.mx

                This article was submitted to Plant Biotechnology, a section of the journal Frontiers in Plant Science

                Article
                10.3389/fpls.2022.899464
                9524194
                36186071
                5fc23fcd-92d0-4edb-8464-ee07d6fc1ec6
                Copyright © 2022 Afridi, Javed, Ali, De Medeiros, Ali, Salam, Sumaira, Marc, Alkhalifah, Selim and Santoyo.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 18 March 2022
                : 08 August 2022
                Page count
                Figures: 3, Tables: 1, Equations: 0, References: 262, Pages: 22, Words: 18979
                Funding
                Funded by: Consejo Nacional de Ciencia y Tecnología, doi 10.13039/501100003141;
                Categories
                Plant Science
                Review

                Plant science & Botany
                plant microbiome,fungi,sustainable agriculture,biotic and abiotic constraints,pgpr – plant growth-promoting rhizobacteria

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