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      Automatic migraine classification via feature selection committee and machine learning techniques over imaging and questionnaire data

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          Abstract

          Background

          Feature selection methods are commonly used to identify subsets of relevant features to facilitate the construction of models for classification, yet little is known about how feature selection methods perform in diffusion tensor images (DTIs). In this study, feature selection and machine learning classification methods were tested for the purpose of automating diagnosis of migraines using both DTIs and questionnaire answers related to emotion and cognition – factors that influence of pain perceptions.

          Methods

          We select 52 adult subjects for the study divided into three groups: control group (15), subjects with sporadic migraine (19) and subjects with chronic migraine and medication overuse (18). These subjects underwent magnetic resonance with diffusion tensor to see white matter pathway integrity of the regions of interest involved in pain and emotion. The tests also gather data about pathology. The DTI images and test results were then introduced into feature selection algorithms (Gradient Tree Boosting, L1-based, Random Forest and Univariate) to reduce features of the first dataset and classification algorithms (SVM (Support Vector Machine), Boosting (Adaboost) and Naive Bayes) to perform a classification of migraine group. Moreover we implement a committee method to improve the classification accuracy based on feature selection algorithms.

          Results

          When classifying the migraine group, the greatest improvements in accuracy were made using the proposed committee-based feature selection method. Using this approach, the accuracy of classification into three types improved from 67 to 93% when using the Naive Bayes classifier, from 90 to 95% with the support vector machine classifier, 93 to 94% in boosting. The features that were determined to be most useful for classification included are related with the pain, analgesics and left uncinate brain (connected with the pain and emotions).

          Conclusions

          The proposed feature selection committee method improved the performance of migraine diagnosis classifiers compared to individual feature selection methods, producing a robust system that achieved over 90% accuracy in all classifiers. The results suggest that the proposed methods can be used to support specialists in the classification of migraines in patients undergoing magnetic resonance imaging.

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          Most cited references32

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          Demyelination increases radial diffusivity in corpus callosum of mouse brain.

          Myelin damage, as seen in multiple sclerosis (MS) and other demyelinating diseases, impairs axonal conduction and can also be associated with axonal degeneration. Accurate assessments of these conditions may be highly beneficial in evaluating and selecting therapeutic strategies for patient management. Recently, an analytical approach examining diffusion tensor imaging (DTI) derived parameters has been proposed to assess the extent of axonal damage, demyelination, or both. The current study uses the well-characterized cuprizone model of experimental demyelination and remyelination of corpus callosum in mouse brain to evaluate the ability of DTI parameters to detect the progression of myelin degeneration and regeneration. Our results demonstrate that the extent of increased radial diffusivity reflects the severity of demyelination in corpus callosum of mouse brain affected by cuprizone treatment. Subsequently, radial diffusivity decreases with the progression of remyelination. Furthermore, radial diffusivity changes were specific to the time course of changes in myelin integrity as distinct from axonal injury, which was detected by betaAPP immunostaining and shown to be most extensive prior to demyelination. Radial diffusivity offers a specific assessment of demyelination and remyelination, as distinct from acute axonal damage.
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            Using mutual information for selecting features in supervised neural net learning.

            R Battiti (1994)
            This paper investigates the application of the mutual information criterion to evaluate a set of candidate features and to select an informative subset to be used as input data for a neural network classifier. Because the mutual information measures arbitrary dependencies between random variables, it is suitable for assessing the "information content" of features in complex classification tasks, where methods bases on linear relations (like the correlation) are prone to mistakes. The fact that the mutual information is independent of the coordinates chosen permits a robust estimation. Nonetheless, the use of the mutual information for tasks characterized by high input dimensionality requires suitable approximations because of the prohibitive demands on computation and samples. An algorithm is proposed that is based on a "greedy" selection of the features and that takes both the mutual information with respect to the output class and with respect to the already-selected features into account. Finally the results of a series of experiments are discussed.
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              • Article: not found

              Migraine--current understanding and treatment.

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                Author and article information

                Contributors
                yolanda.garcia@deusto.es
                mbgarciazapi@deusto.es
                mariaangeles.gomezbeldarrain@osakidetza.eus
                bfernandez@osatek.eus
                hospit05@sarenet.es
                Journal
                BMC Med Inform Decis Mak
                BMC Med Inform Decis Mak
                BMC Medical Informatics and Decision Making
                BioMed Central (London )
                1472-6947
                13 April 2017
                13 April 2017
                2017
                : 17
                : 38
                Affiliations
                [1 ]DeustoTech - Fundacion Deusto, Avda. Universidades, 24, Bilbao, 48007 Spain
                [2 ]Facultad IngenieriaUniversidad de Deusto, Avda. Universidades, 24, Bilbao, 48007 Spain
                [3 ]GRID grid.414476.4, , Service of Neurology Hospital de Galdakao-Usansolo, ; Barrio Labeaga, S/N, Galdakao, 48960 Spain
                [4 ]Research and Innovation Department, Magnetic Resonance Imaging Unit, OSATEK, Alameda Urquijo, 36, Bilbao, 48011 Spain
                Article
                434
                10.1186/s12911-017-0434-4
                5390380
                28407777
                5df07991-b729-4cbc-bb17-c6f891a69f78
                © The Author(s) 2017

                Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 13 August 2016
                : 29 March 2017
                Funding
                Funded by: Instituto de Salud Carlos III (ES)
                Award ID: PI11/1243
                Categories
                Research Article
                Custom metadata
                © The Author(s) 2017

                Bioinformatics & Computational biology
                feature selection,classification,dti,svm,boosting(adaboost),naive bayes,migraine,committee

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