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      Epidemiology of Acute Respiratory Infections in Children in Guangzhou: A Three-Year Study

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          Abstract

          Acute Respiratory Infections (ARI) are some of the most common human diseases worldwide. However, they have a complex and diverse etiology, and the characteristics of the pathogens involved in respiratory infections in developing countries are not well understood. In this work, we analyzed the characteristics of 17 common respiratory pathogens in children (≤14 years old) with ARI in Guangzhou, southern China over a 3-year period using real-time polymerase chain reaction. Pathogens were identified in 2361/4242 (55.7%) patients, and the positivity rate varied seasonally. Ten of the 17 pathogens investigated showed positivity rates of more than 5%. The most frequently detected pathogens were respiratory syncytial virus (768/2361, 32.5%), influenza A virus (428/2361, 18.1%), enterovirus (138/2361, 13.3%), Mycoplasma pneumoniae (267/2361, 11.3%) and adenovirus (213/2361, 9.0%). Co-pathogens were common and found in 503 of 2361 (21.3%) positive samples. When ranked according to frequency of occurrence, the pattern of co-pathogens was similar to that of the primary pathogens, with the exception of human bocavirus, human coronavirus and human metapneumovirus. Significant differences were found in age prevalence in 10 of the 17 pathogens (p≤0.009): four basic patterns were observed, A: detection rates increased with age, B: detection rates declined with age, C: the detection rate showed distinct peaks or D: numbers of patients were too low to detect a trend or showed no significant difference among age groups (p>0.05). These data will be useful for planning vaccine research and control strategies and for studies predicting pathogen prevalence.

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          Most cited references49

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          A newly discovered human pneumovirus isolated from young children with respiratory tract disease

          From 28 young children in the Netherlands, we isolated a paramyxovirus that was identified as a tentative new member of the Metapneumovirus genus based on virological data, sequence homology and gene constellation. Previously, avian pneumovirus was the sole member of this recently assigned genus, hence the provisional name for the newly discovered virus: human metapneumovirus. The clinical symptoms of the children from whom the virus was isolated were similar to those caused by human respiratory syncytial virus infection, ranging from upper respiratory tract disease to severe bronchiolitis and pneumonia. Serological studies showed that by the age of five years, virtually all children in the Netherlands have been exposed to human metapneumovirus and that the virus has been circulating in humans for at least 50 years.
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            Cloning of a human parvovirus by molecular screening of respiratory tract samples.

            The identification of new virus species is a key issue for the study of infectious disease but is technically very difficult. We developed a system for large-scale molecular virus screening of clinical samples based on host DNA depletion, random PCR amplification, large-scale sequencing, and bioinformatics. The technology was applied to pooled human respiratory tract samples. The first experiments detected seven human virus species without the use of any specific reagent. Among the detected viruses were one coronavirus and one parvovirus, both of which were at that time uncharacterized. The parvovirus, provisionally named human bocavirus, was in a retrospective clinical study detected in 17 additional patients and associated with lower respiratory tract infections in children. The molecular virus screening procedure provides a general culture-independent solution to the problem of detecting unknown virus species in single or pooled samples. We suggest that a systematic exploration of the viruses that infect humans, "the human virome," can be initiated.
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              Respiratory syncytial virus and parainfluenza virus.

              C Hall (2001)
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2014
                5 May 2014
                : 9
                : 5
                : e96674
                Affiliations
                [1 ]State Key Laboratory of Respiratory Diseases, National Clinical Research Center for Respiratory Disease, Guangzhou Medical University, Guangzhou, Guangdong, China
                [2 ]The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China
                University Hospital San Giovanni Battista di Torino, Italy
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Conceived and designed the experiments: RZ WKL QL. Performed the experiments: WKL QL HXL XKC MXC SYQ. Analyzed the data: WKL QL RZ. Contributed reagents/materials/analysis tools: DHC ZYY. Wrote the paper: WKL QL RZ.

                Article
                PONE-D-13-48629
                10.1371/journal.pone.0096674
                4010508
                24797911
                5cdf87d1-98b8-4371-a2fd-601ca7ca1ebb
                Copyright @ 2014

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 19 November 2013
                : 10 April 2014
                Page count
                Pages: 9
                Funding
                The State Major Infectious Disease Research Program (China Central Government, 2012ZX10004-213), National Science and technology support program (2012BAI05B01), The Combination Project of Guangdong Province (2010B091000018), Research Project of Guangzhou Medical University (2012A04), and the project of Respiratory Medical R&D Centre of Guangdong Province (2010B080100027) provided financial support for this work. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Genetics
                Molecular Genetics
                Medicine and Health Sciences
                Diagnostic Medicine
                Epidemiology
                Infectious Disease Epidemiology
                Pediatric Epidemiology
                Infectious Diseases
                Bacterial Diseases
                Viral Diseases
                Pathology and Laboratory Medicine
                Clinical Pathology
                Pulmonology
                Respiratory Infections
                Physical Sciences
                Mathematics
                Statistics (Mathematics)
                Statistical Methods
                Research and Analysis Methods
                Research Design
                Clinical Research Design

                Uncategorized
                Uncategorized

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