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      Tirap controls Mycobacterium tuberculosis phagosomal acidification

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          Abstract

          Progression of tuberculosis is tightly linked to a disordered immune balance, resulting in inability of the host to restrict intracellular bacterial replication and its subsequent dissemination. The immune response is mainly characterized by an orchestrated recruitment of inflammatory cells secreting cytokines. This response results from the activation of innate immunity receptors that trigger downstream intracellular signaling pathways involving adaptor proteins such as the TIR-containing adaptor protein (Tirap). In humans, resistance to tuberculosis is associated with a loss-of-function in Tirap. Here, we explore how genetic deficiency in Tirap impacts resistance to Mycobacterium tuberculosis (Mtb) infection in a mouse model and ex vivo. Interestingly, compared to wild type littermates, Tirap heterozygous mice were more resistant to Mtb infection. Upon investigation at the cellular level, we observed that mycobacteria were not able to replicate in Tirap-deficient macrophages compared to wild type counterparts. We next showed that Mtb infection induced Tirap expression which prevented phagosomal acidification and rupture. We further demonstrate that the Tirap-mediated anti-tuberculosis effect occurs through a Cish-dependent signaling pathway. Our findings provide new molecular evidence about how Mtb manipulates innate immune signaling to enable intracellular replication and survival of the pathogen, thus paving the way for host-directed approaches to treat tuberculosis.

          Author summary

          The efficiency of Mycobacterium tuberculosis in establishing its replicative niche relies on its capacity to manipulate host factors. The aim of our study was to identify the impact of a genetic deficiency in Tirap, a key factor of the innate immunity response, on the evolution of in vivo and ex vivo tuberculosis infections. Here, we show that mice heterozygous for a truncated Tirap protein were more resistant to the infection, displaying less bacterial burden in the lungs. At the cellular level, we identified a repression of Cish-mediated phagosomal acidification in Tirap-deficient macrophages resulting in an enhanced bactericidal activity. Our results provide new insights into how Mtb infection promotes Tirap expression to ensure its survival.

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          Most cited references51

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          Irg1 expression in myeloid cells prevents immunopathology during M. tuberculosis infection

          Nair et al. define a key role for Irg1 in minimizing the pathological immune response associated with Mtb infection. Using Irg1−/− and Irg1 fl/fl conditional mice, detailed immune cell analysis, and transcriptional profiling, their data supports a model where Irg1 expression in myeloid cell subsets tempers inflammation and controls the recruitment and infection of neutrophils during Mtb infection.
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            Mycobacterial ESX-1 secretion system mediates host cell lysis through bacterium contact-dependent gross membrane disruptions.

            Mycobacterium tuberculosis and Mycobacterium marinum are thought to exert virulence, in part, through their ability to lyse host cell membranes. The type VII secretion system ESX-1 [6-kDa early secretory antigenic target (ESAT-6) secretion system 1] is required for both virulence and host cell membrane lysis. Both activities are attributed to the pore-forming activity of the ESX-1-secreted substrate ESAT-6 because multiple studies have reported that recombinant ESAT-6 lyses eukaryotic membranes. We too find ESX-1 of M. tuberculosis and M. marinum lyses host cell membranes. However, we find that recombinant ESAT-6 does not lyse cell membranes. The lytic activity previously attributed to ESAT-6 is due to residual detergent in the preparations. We report here that ESX-1-dependent cell membrane lysis is contact dependent and accompanied by gross membrane disruptions rather than discrete pores. ESX-1-mediated lysis is also morphologically distinct from the contact-dependent lysis of other bacterial secretion systems. Our findings suggest redirection of research to understand the mechanism of ESX-1-mediated lysis.
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              ESX-1 and phthiocerol dimycocerosates of Mycobacterium tuberculosis act in concert to cause phagosomal rupture and host cell apoptosis

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: Writing – original draftRole: Writing – review & editing
                Role: Investigation
                Role: Investigation
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: ResourcesRole: Writing – review & editing
                Role: Investigation
                Role: Formal analysisRole: Investigation
                Role: Resources
                Role: Formal analysisRole: Investigation
                Role: Formal analysisRole: Investigation
                Role: Formal analysis
                Role: Formal analysis
                Role: Investigation
                Role: Resources
                Role: InvestigationRole: Resources
                Role: ResourcesRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: ResourcesRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: ResourcesRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: ResourcesRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS Pathog
                PLoS Pathog
                plos
                PLOS Pathogens
                Public Library of Science (San Francisco, CA USA )
                1553-7366
                1553-7374
                8 March 2023
                March 2023
                : 19
                : 3
                : e1011192
                Affiliations
                [1 ] Univ. Lille, CNRS, INSERM, CHU Lille, Institut Pasteur de Lille, U1019—UMR 9017—CIIL—Center for Infection and Immunity of Lille, Lille, France
                [2 ] High Throughput Screening Laboratory, The Francis Crick Institute, London, United Kingdom
                [3 ] Pasteur-TheraVectys Joint Lab, Institut Pasteur, Université Paris Cité, Paris, France
                [4 ] Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US 41—UMS 2014—PLBS, Lille, France
                [5 ] Laboratory of Cellular and Molecular Immunology, GIGA-Research, Liège, Belgium
                [6 ] Laboratory of Cell Physiology, INSERM U1003, University of Lille, Lille, France
                McGill UniversityHealth Centre, CANADA
                Author notes

                The authors have declared that no competing interests exist.

                ‡ These authors are joint senior authors on this work.

                Author information
                https://orcid.org/0000-0002-4444-0011
                Article
                PPATHOGENS-D-22-00640
                10.1371/journal.ppat.1011192
                9994722
                36888688
                52d830de-df14-49ff-9886-2c803fd168cb
                © 2023 Belhaouane et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 8 April 2022
                : 30 January 2023
                Page count
                Figures: 6, Tables: 2, Pages: 24
                Funding
                Funded by: Agence nationale de recherche
                Award ID: ANR-16-CE35-0009
                Award Recipient :
                Funded by: Agence nationale de la recherche
                Award ID: ANR-18-JAM2-0002
                Award Recipient :
                Funded by: EMBO Yong Investigator Program
                Award Recipient :
                Funded by: Feder
                Award ID: (n°12001407 (D-AL) Equipex Imaginex BioMed
                Award Recipient :
                Funded by: I-SITE ULNE Foundation
                Award ID: ERC Generator Grant
                Award Recipient :
                Funded by: Fondation pour la recherche médicale
                Award ID: SPF20170938709
                Award Recipient :
                Financial support for this work was provided by the Agence Nationale de la Recherche (n°ANR-16-CE35-0009 and ANR-18-JAM2-0002 to PB), the EMBO Young Investigator Program (to PB), the Feder (n°12001407 (D-AL) Equipex Imaginex BioMed to PB), the I-SITE ULNE Foundation (ERC Generator Grant to EH) and the Fondation pour la Recherche Medicale (n°SPF20170938709 to AM). Parts of this project were also supported under the framework of the JPIAMR – Joint Programming Initiative on Anti-microbial Resistance 2018-00969 (to PB, AM and JC). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Organisms
                Bacteria
                Actinobacteria
                Mycobacterium Tuberculosis
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Animal Cells
                Blood Cells
                White Blood Cells
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                Infectious disease & Microbiology
                Infectious disease & Microbiology

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