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      OpenKBP-Opt: an international and reproducible evaluation of 76 knowledge-based planning pipelines

      research-article
      1 , 2 , * , 1 , 1 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10 , 10 , 11 , 12 , 13 , 13 , 14 , 15 , 16 , 17 , 18 , 19 , 19 , 10 , 20 , 21 , 19 , 22 , 10 , 23 , 12 , 13 , 24 , 25 , 26 , 7 , 10 , 11 , 13 , 10 , 27 , 3 , 3 , 28 , 10 , 10 , 29 , 8 , 30 , 19 , 31 , 32 , 33 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41 , 38 , 39 , 1 , 2 , 40
      Physics in medicine and biology

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          Abstract

          Objective.

          To establish an open framework for developing plan optimization models for knowledge-based planning (KBP).

          Approach.

          Our framework includes radiotherapy treatment data (i.e. reference plans) for 100 patients with head-and-neck cancer who were treated with intensity-modulated radiotherapy. That data also includes high-quality dose predictions from 19 KBP models that were developed by different research groups using out-of-sample data during the OpenKBP Grand Challenge. The dose predictions were input to four fluence-based dose mimicking models to form 76 unique KBP pipelines that generated 7600 plans (76 pipelines×100 patients). The predictions and KBP-generated plans were compared to the reference plans via: the dose score, which is the average mean absolute voxel-by-voxel difference in dose; the deviation in dose-volume histogram (DVH) points; and the frequency of clinical planning criteria satisfaction. We also performed a theoretical investigation to justify our dose mimicking models.

          Main results.

          The range in rank order correlation of the dose score between predictions and their KBP pipelines was 0.50–0.62, which indicates that the quality of the predictions was generally positively correlated with the quality of the plans. Additionally, compared to the input predictions, the KBP-generated plans performed significantly better P<0.05; one-sided Wilcoxon test) on 18 of 23 DVH points. Similarly, each optimization model generated plans that satisfied a higher percentage of criteria than the reference plans, which satisfied 3.5% more criteria than the set of all dose predictions. Lastly, our theoretical investigation demonstrated that the dose mimicking models generated plans that are also optimal for an inverse planning model.

          Significance.

          This was the largest international effort to date for evaluating the combination of KBP prediction and optimization models. We found that the best performing models significantly outperformed the reference dose and dose predictions. In the interest of reproducibility, our data and code is freely available.

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          Most cited references39

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          Optimization of conditional value-at-risk

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            CERR: a computational environment for radiotherapy research.

            A software environment is described, called the computational environment for radiotherapy research (CERR, pronounced "sir"). CERR partially addresses four broad needs in treatment planning research: (a) it provides a convenient and powerful software environment to develop and prototype treatment planning concepts, (b) it serves as a software integration environment to combine treatment planning software written in multiple languages (MATLAB, FORTRAN, C/C++, JAVA, etc.), together with treatment plan information (computed tomography scans, outlined structures, dose distributions, digital films, etc.), (c) it provides the ability to extract treatment plans from disparate planning systems using the widely available AAPM/RTOG archiving mechanism, and (d) it provides a convenient and powerful tool for sharing and reproducing treatment planning research results. The functional components currently being distributed, including source code, include: (1) an import program which converts the widely available AAPM/RTOG treatment planning format into a MATLAB cell-array data object, facilitating manipulation; (2) viewers which display axial, coronal, and sagittal computed tomography images, structure contours, digital films, and isodose lines or dose colorwash, (3) a suite of contouring tools to edit and/or create anatomical structures, (4) dose-volume and dose-surface histogram calculation and display tools, and (5) various predefined commands. CERR allows the user to retrieve any AAPM/RTOG key word information about the treatment plan archive. The code is relatively self-describing, because it relies on MATLAB structure field name definitions based on the AAPM/RTOG standard. New structure field names can be added dynamically or permanently. New components of arbitrary data type can be stored and accessed without disturbing system operation. CERR has been applied to aid research in dose-volume-outcome modeling, Monte Carlo dose calculation, and treatment planning optimization. In summary, CERR provides a powerful, convenient, and common framework which allows researchers to use common patient data sets, and compare and share research results.
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              The impact of artificial intelligence in medicine on the future role of the physician

              The practice of medicine is changing with the development of new Artificial Intelligence (AI) methods of machine learning. Coupled with rapid improvements in computer processing, these AI-based systems are already improving the accuracy and efficiency of diagnosis and treatment across various specializations. The increasing focus of AI in radiology has led to some experts suggesting that someday AI may even replace radiologists. These suggestions raise the question of whether AI-based systems will eventually replace physicians in some specializations or will augment the role of physicians without actually replacing them. To assess the impact on physicians this research seeks to better understand this technology and how it is transforming medicine. To that end this paper researches the role of AI-based systems in performing medical work in specializations including radiology, pathology, ophthalmology, and cardiology. It concludes that AI-based systems will augment physicians and are unlikely to replace the traditional physician–patient relationship.
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                Author and article information

                Journal
                0401220
                6459
                Phys Med Biol
                Phys Med Biol
                Physics in medicine and biology
                0031-9155
                1361-6560
                28 November 2023
                12 September 2022
                12 September 2022
                05 December 2023
                : 67
                : 18
                : 10.1088/1361-6560/ac8044
                Affiliations
                [1 ]Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, ON, Canada
                [2 ]Vector Institute, Toronto, ON, Canada
                [3 ]Department of Radiation Oncology, University of Virginia Health System, Charlottesville, VA, United States of America
                [4 ]Department of Molecular Imaging Radiation Oncology, UCLouvain, Louvain-la-Neuve, Belgium
                [5 ]Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, United States of America
                [6 ]Department of Radiation Oncology, The University of Alabama at Birmingham, Birmingham, AL, United States of America
                [7 ]Department of Engineering and Applied Physics, University of Science and Technology of China, Hefei, People’s Republic of China
                [8 ]Shenying Medical Technology Co., Ltd., Shenzhen, Guangdong, People’s Republic of China
                [9 ]Department of Radiation Oncology, Yonsei University College of Medicine, Seoul, Republic of Korea
                [10 ]Department of Physics, National University of Colombia, Medellín, Colombia
                [11 ]Atominstitut, Vienna University of Technology, Vienna, Austria
                [12 ]Department of Biomedical Engineering, Cleveland Clinic, Cleveland, OH, United States of America
                [13 ]Department of Radiation Physics, The University of Texas MD Anderson Cancer Center, Houston, TX, United States of America
                [14 ]Department of Radiation Oncology, Cleveland Clinic, Cleveland, OH, United States of America
                [15 ]Department of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, People’s Republic of China
                [16 ]Department of Radiation Oncology, Medical University of Vienna, Vienna, Austria
                [17 ]Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, United States of America
                [18 ]Department of Radiation Oncology, Peking University Cancer Hospital and Institute, Beijing, People’s Republic of China
                [19 ]Department of Electrical Engineering and Automation, Anhui University, Hefei, People’s Republic of China
                [20 ]Department of Radiation Oncology, Massachusetts General Hospital, Boston, MA, United States of America
                [21 ]Department of Radiation Oncology, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America
                [22 ]Department of Medical Imaging, Taiwan AI Labs, Taipei, Taiwan
                [23 ]Department Of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan
                [24 ]Medical Artificial Intelligence and Automation (MAIA) Laboratory, Department of Radiation Oncology, The University of Texas Southwestern Medical Center, Dallas, TX, United States of America
                [25 ]Department of Radiation Oncology, Thomas Jefferson University, Philadelphia, PA, United States of America
                [26 ]Department of Medical Physics, Al-Neelain University, Khartoum, Sudan
                [27 ]Institute of Science and Technology for Brain-inspired Intelligence, Fudan University, Shanghai, People’s Republic of China
                [28 ]Studio Vodels, Atlanta, GA, United States of America
                [29 ]Department Computer Science, Aalto University, Espoo, Finland
                [30 ]Department of Electrical Engineering, KULeuven, Leuven, Belgium
                [31 ]Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY, United States of America
                [32 ]Tencent AI Lab, Shenzhen, Guangdong, People’s Republic of China
                [33 ]Department of Radiation Oncology, Virginia Commonwealth University Medical Center, Richmond, VA, United States of America
                [34 ]Department of Radiation Oncology, Henry Ford Health System, Detroit, MI, United States of America
                [35 ]Faculty of Health, University of Applied Sciences Wiener Neustadt, Wiener Neustadt, Austria
                [36 ]Competence Center for Preclinical Imaging and Biomedical Engineering, University of Applied Sciences Wiener Neustadt, Wiener Neustadt, Austria
                [37 ]Department of Radiation Oncology, University of California, San Diego, La Jolla, CA, United States of America
                [38 ]Radiation Medicine Program, UHN Princess Margaret Cancer Centre, Toronto, ON, Canada
                [39 ]Department of Radiation Oncology, University of Toronto, Toronto, ON, Canada
                [40 ]Techna Institute for the Advancement of Technology for Health, Toronto, ON, Canada
                [41 ]Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada
                Author notes
                [* ]Author to whom any correspondence should be addressed. ababier@ 123456mie.utoronto.ca
                Author information
                http://orcid.org/0000-0002-5949-2500
                http://orcid.org/0000-0003-1933-066X
                http://orcid.org/0000-0001-5790-7875
                http://orcid.org/0000-0001-7982-2039
                http://orcid.org/0000-0002-9485-3076
                http://orcid.org/0000-0002-8973-5139
                http://orcid.org/0000-0003-1414-3849
                http://orcid.org/0000-0002-9695-6079
                http://orcid.org/0000-0002-6997-5717
                http://orcid.org/0000-0003-4659-0766
                http://orcid.org/0000-0002-0121-9579
                http://orcid.org/0000-0003-1017-5237
                http://orcid.org/0000-0002-1813-1784
                http://orcid.org/0000-0002-7461-3956
                http://orcid.org/0000-0002-1165-1509
                http://orcid.org/0000-0002-2041-9074
                http://orcid.org/0000-0003-0415-6398
                http://orcid.org/0000-0002-9226-6505
                http://orcid.org/0000-0002-7833-8138
                http://orcid.org/0000-0003-1583-7121
                http://orcid.org/0000-0002-9590-0655
                http://orcid.org/0000-0002-1686-4466
                http://orcid.org/0000-0002-1286-475X
                http://orcid.org/0000-0003-0486-1556
                http://orcid.org/0000-0002-0604-3197
                http://orcid.org/0000-0002-9949-2863
                http://orcid.org/0000-0001-5354-7518
                http://orcid.org/0000-0001-5136-5913
                http://orcid.org/0000-0002-4269-1976
                http://orcid.org/0000-0002-6045-8457
                http://orcid.org/0000-0002-0639-4122
                http://orcid.org/0000-0002-5085-419X
                http://orcid.org/0000-0003-0850-6690
                http://orcid.org/0000-0003-0099-2276
                http://orcid.org/0000-0003-4176-8457
                http://orcid.org/0000-0002-8775-9575
                http://orcid.org/0000-0002-4128-1692
                Article
                NIHMS1946016
                10.1088/1361-6560/ac8044
                10696540
                36093921
                48f6ac3e-9f7d-4c69-b68c-21c55df1d29a

                Original content from this work may be used under the terms of the Creative Commons Attribution 4.0 licence.

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