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      Attention‐aware 3D U‐Net convolutional neural network for knowledge‐based planning 3D dose distribution prediction of head‐and‐neck cancer

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          Abstract

          Purpose

          Deep learning–based knowledge‐based planning (KBP) methods have been introduced for radiotherapy dose distribution prediction to reduce the planning time and maintain consistent high‐quality plans. This paper presents a novel KBP model using an attention‐gating mechanism and a three‐dimensional (3D) U‐Net for intensity‐modulated radiation therapy (IMRT) 3D dose distribution prediction in head‐and‐neck cancer.

          Methods

          A total of 340 head‐and‐neck cancer plans, representing the OpenKBP—2020 AAPM Grand Challenge data set, were used in this study. All patients were treated with the IMRT technique and a dose prescription of 70 Gy. The data set was randomly divided into 64%/16%/20% as training/validation/testing cohorts. An attention‐gated 3D U‐Net architecture model was developed to predict full 3D dose distribution. The developed model was trained using the mean‐squared error loss function, Adam optimization algorithm, a learning rate of 0.001, 120 epochs, and batch size of 4. In addition, a baseline U‐Net model was also similarly trained for comparison. The model performance was evaluated on the testing data set by comparing the generated dose distributions against the ground‐truth dose distributions using dose statistics and clinical dosimetric indices. Its performance was also compared to the baseline model and the reported results of other deep learning‐based dose prediction models.

          Results

          The proposed attention‐gated 3D U‐Net model showed high capability in accurately predicting 3D dose distributions that closely replicated the ground‐truth dose distributions of 68 plans in the test set. The average value of the mean absolute dose error was 2.972 ± 1.220 Gy (vs. 2.920 ± 1.476 Gy for a baseline U‐Net) in the brainstem, 4.243 ± 1.791 Gy (vs. 4.530 ± 2.295 Gy for a baseline U‐Net) in the left parotid, 4.622 ± 1.975 Gy (vs. 4.223 ± 1.816 Gy for a baseline U‐Net) in the right parotid, 3.346 ± 1.198 Gy (vs. 2.958 ± 0.888 Gy for a baseline U‐Net) in the spinal cord, 6.582 ± 3.748 Gy (vs. 5.114 ± 2.098 Gy for a baseline U‐Net) in the esophagus, 4.756 ± 1.560 Gy (vs. 4.992 ± 2.030 Gy for a baseline U‐Net) in the mandible, 4.501 ± 1.784 Gy (vs. 4.925 ± 2.347 Gy for a baseline U‐Net) in the larynx, 2.494 ± 0.953 Gy (vs. 2.648 ± 1.247 Gy for a baseline U‐Net) in the PTV_70, and 2.432 ± 2.272 Gy (vs. 2.811 ± 2.896 Gy for a baseline U‐Net) in the body contour. The average difference in predicting the D 99 value for the targets (PTV_70, PTV_63, and PTV_56) was 2.50 ± 1.77 Gy. For the organs at risk, the average difference in predicting the D m a x (brainstem, spinal cord, and mandible) and D m e a n (left parotid, right parotid, esophagus, and larynx) values was 1.43 ± 1.01 and 2.44 ± 1.73 Gy, respectively. The average value of the homogeneity index was 7.99 ± 1.45 for the predicted plans versus 5.74 ± 2.95 for the ground‐truth plans, whereas the average value of the conformity index was 0.63 ± 0.17 for the predicted plans versus 0.89 ± 0.19 for the ground‐truth plans. The proposed model needs less than 5 s to predict a full 3D dose distribution of 64 × 64 × 64 voxels for a new patient that is sufficient for real‐time applications.

          Conclusions

          The attention‐gated 3D U‐Net model demonstrated a capability in predicting accurate 3D dose distributions for head‐and‐neck IMRT plans with consistent quality. The prediction performance of the proposed model was overall superior to a baseline standard U‐Net model, and it was also competitive to the performance of the best state‐of‐the‐art dose prediction method reported in the literature. The proposed model could be used to obtain dose distributions for decision‐making before planning, quality assurance of planning, and guiding‐automated planning for improved plan consistency, quality, and planning efficiency.

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          Most cited references56

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          Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images

          We propose a novel attention gate (AG) model for medical image analysis that automatically learns to focus on target structures of varying shapes and sizes. Models trained with AGs implicitly learn to suppress irrelevant regions in an input image while highlighting salient features useful for a specific task. This enables us to eliminate the necessity of using explicit external tissue/organ localisation modules when using convolutional neural networks (CNNs). AGs can be easily integrated into standard CNN models such as VGG or U-Net architectures with minimal computational overhead while increasing the model sensitivity and prediction accuracy. The proposed AG models are evaluated on a variety of tasks, including medical image classification and segmentation. For classification, we demonstrate the use case of AGs in scan plane detection for fetal ultrasound screening. We show that the proposed attention mechanism can provide efficient object localisation while improving the overall prediction performance by reducing false positives. For segmentation, the proposed architecture is evaluated on two large 3D CT abdominal datasets with manual annotations for multiple organs. Experimental results show that AG models consistently improve the prediction performance of the base architectures across different datasets and training sizes while preserving computational efficiency. Moreover, AGs guide the model activations to be focused around salient regions, which provides better insights into how model predictions are made. The source code for the proposed AG models is publicly available.
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            Quantitative Analyses of Normal Tissue Effects in the Clinic (QUANTEC): an introduction to the scientific issues.

            Advances in dose-volume/outcome (or normal tissue complication probability, NTCP) modeling since the seminal Emami paper from 1991 are reviewed. There has been some progress with an increasing number of studies on large patient samples with three-dimensional dosimetry. Nevertheless, NTCP models are not ideal. Issues related to the grading of side effects, selection of appropriate statistical methods, testing of internal and external model validity, and quantification of predictive power and statistical uncertainty, all limit the usefulness of much of the published literature. Synthesis (meta-analysis) of data from multiple studies is often impossible because of suboptimal primary analysis, insufficient reporting and variations in the models and predictors analyzed. Clinical limitations to the current knowledge base include the need for more data on the effect of patient-related cofactors, interactions between dose distribution and cytotoxic or molecular targeted agents, and the effect of dose fractions and overall treatment time in relation to nonuniform dose distributions. Research priorities for the next 5-10 years are proposed. Copyright 2010 Elsevier Inc. All rights reserved.
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              Attention U-Net: Learning Where to Look for the Pancreas

              We propose a novel attention gate (AG) model for medical imaging that automatically learns to focus on target structures of varying shapes and sizes. Models trained with AGs implicitly learn to suppress irrelevant regions in an input image while highlighting salient features useful for a specific task. This enables us to eliminate the necessity of using explicit external tissue/organ localisation modules of cascaded convolutional neural networks (CNNs). AGs can be easily integrated into standard CNN architectures such as the U-Net model with minimal computational overhead while increasing the model sensitivity and prediction accuracy. The proposed Attention U-Net architecture is evaluated on two large CT abdominal datasets for multi-class image segmentation. Experimental results show that AGs consistently improve the prediction performance of U-Net across different datasets and training sizes while preserving computational efficiency. The code for the proposed architecture is publicly available. Accepted to published in MIDL'18 (Revised Version) / OpenReview link: https://openreview.net/forum?id=Skft7cijM
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                Author and article information

                Contributors
                alexanderfadul@yahoo.com
                Journal
                J Appl Clin Med Phys
                J Appl Clin Med Phys
                10.1002/(ISSN)1526-9914
                ACM2
                Journal of Applied Clinical Medical Physics
                John Wiley and Sons Inc. (Hoboken )
                1526-9914
                09 May 2022
                July 2022
                : 23
                : 7 ( doiID: 10.1002/acm2.v23.7 )
                : e13630
                Affiliations
                [ 1 ] Department of Medical Physics Al‐Neelain University Khartoum Sudan
                [ 2 ] Department of Physics College of Science Princess Nourah bint Abdulrahman University Riyadh Saudi Arabia
                Author notes
                [*] [* ] Correspondence

                Alexander F. I. Osman, Department of Medical Physics, Al‐Neelain University, Khartoum 11121, Sudan.

                Email: alexanderfadul@ 123456yahoo.com

                Author information
                https://orcid.org/0000-0002-1286-475X
                Article
                ACM213630
                10.1002/acm2.13630
                9278691
                35533234
                4535d5d7-cfee-4603-9b2a-9f8047495ee0
                © 2022 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, LLC on behalf of The American Association of Physicists in Medicine.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 17 January 2022
                : 20 April 2022
                Page count
                Figures: 7, Tables: 1, Pages: 14, Words: 8261
                Categories
                Radiation Oncology Physics
                Radiation Oncology Physics
                Custom metadata
                2.0
                July 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.1.7 mode:remove_FC converted:13.07.2022

                3d dose prediction,attention‐gated u‐net,convolutional neural networks,deep learning,head‐and‐neck cancer,intensity‐modulated radiation therapy,knowledge‐based planning,radiation therapy,radiotherapy treatment planning

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