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      Exploring ammonium tolerance in a large panel of Arabidopsis thaliana natural accessions

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          Summary

          Ammonium nutrition is toxic to many plants. Arabidopsis displays high intraspecific variability in ammonium tolerance (shoot biomass), and ammonium accumulation seems to be an important player in this variability.

          Abstract

          Plants are dependent on exogenous nitrogen (N) supply. Ammonium (NH 4 +), together with nitrate (NO 3 ), is one of the main nitrogenous compounds available in the soil. Paradoxically, although NH 4 + assimilation requires less energy than that of NO 3 , many plants display toxicity symptoms when grown with NH 4 + as the sole N source. However, in addition to species-specific ammonium toxicity, intraspecific variability has also been shown. Thus, the aim of this work was to study the intraspecific ammonium tolerance in a large panel of Arabidopsis thaliana natural accessions. Plants were grown with either 1mM NO 3 or NH 4 + as the N source, and several parameters related to ammonium tolerance and assimilation were determined. Overall, high variability was observed in A. thaliana shoot growth under both forms of N nutrition. From the parameters determined, tissue ammonium content was the one with the highest impact on shoot biomass, and interestingly this was also the case when N was supplied as NO 3 . Enzymes of nitrogen assimilation did not have an impact on A. thaliana biomass variation, but the N source affected their activity. Glutamate dehydrogenase (GDH) aminating activity was, in general, higher in NH 4 +-fed plants. In contrast, GDH deaminating activity was higher in NO 3 -fed plants, suggesting a differential role for this enzyme as a function of the N form supplied. Overall, NH 4 + accumulation seems to be an important player in Arabidopsis natural variability in ammonium tolerance rather than the cell NH 4 + assimilation capacity.

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          An Earth-system perspective of the global nitrogen cycle.

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            Nitrogen uptake, assimilation and remobilization in plants: challenges for sustainable and productive agriculture.

            Productive agriculture needs a large amount of expensive nitrogenous fertilizers. Improving nitrogen use efficiency (NUE) of crop plants is thus of key importance. NUE definitions differ depending on whether plants are cultivated to produce biomass or grain yields. However, for most plant species, NUE mainly depends on how plants extract inorganic nitrogen from the soil, assimilate nitrate and ammonium, and recycle organic nitrogen. Efforts have been made to study the genetic basis as well as the biochemical and enzymatic mechanisms involved in nitrogen uptake, assimilation, and remobilization in crops and model plants. The detection of the limiting factors that could be manipulated to increase NUE is the major goal of such research. An overall examination of the physiological, metabolic, and genetic aspects of nitrogen uptake, assimilation and remobilization is presented in this review. The enzymes and regulatory processes manipulated to improve NUE components are presented. Results obtained from natural variation and quantitative trait loci studies are also discussed. This review presents the complexity of NUE and supports the idea that the integration of the numerous data coming from transcriptome studies, functional genomics, quantitative genetics, ecophysiology and soil science into explanatory models of whole-plant behaviour will be promising.
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              Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency.

              Development of genetic varieties with improved nitrogen use efficiency (NUE) is essential for sustainable agriculture. Generally, NUE can be divided into two parts. First, assimilation efficiency involves nitrogen (N) uptake and assimilation and second utilization efficiency involves N remobilization. Understanding the mechanisms regulating these processes is crucial for the improvement of NUE in crop plants. One important approach is to develop an understanding of the plant response to different N regimes, especially to N limitation, using various methods including transcription profiling, analysing mutants defective in their normal response to N limitation, and studying plants that show better growth under N-limiting conditions. One can then attempt to improve NUE in crop plants using the knowledge gained from these studies. There are several potential genetic and molecular approaches for the improvement of crop NUE discussed in this review. Increased knowledge of how plants respond to different N levels as well as to other environmental conditions is required to achieve this.
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                Author and article information

                Journal
                J Exp Bot
                J. Exp. Bot
                jexbot
                exbotj
                Journal of Experimental Botany
                Oxford University Press (UK )
                0022-0957
                1460-2431
                November 2014
                9 September 2014
                9 September 2014
                : 65
                : 20
                : 6023-6033
                Affiliations
                1Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU) , Apdo. 644, E-48080 Bilbao, Spain
                2Ikerbasque, Basque Foundation for Science , E-48011 Bilbao, Spain
                Author notes
                * To whom correspondence should be addressed. E-mail: daniel.marino@ 123456ehu.es
                Article
                10.1093/jxb/eru342
                4203136
                25205573
                3033f3d3-ccc6-4e47-88e2-852a0db68d60
                © The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                Page count
                Pages: 11
                Categories
                Research Paper

                Plant science & Botany
                ammonium,arabidopsis thaliana,glutamate dehydrogenase,glutamine synthetase,natural variation,nitrate,nitrogen.

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