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      VOC-DL: Deep Learning Prediction Model for COVID-19 Based on VOC Virus Variants

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          Abstract

          Background and Objective

          : The ever-mutating COVID-19 has infected billions of people worldwide and seriously affected the stability of human society and the world economic development. Therefore, it is essential to make long-term and short-term forecasts for COVID-19. However, the pandemic situation in different countries and regions may be dominated by different virus variants, and the transmission capacity of different virus variants diversifies. Therefore, there is a need to develop a predictive model that can incorporate mutational information to make reasonable predictions about the current pandemic situation.

          Methods

          : This paper proposes a deep learning prediction framework, VOC-DL, based on Variants Of Concern (VOC). The framework uses slope feature method to process the time series dataset containing VOC variant information, and uses VOC-LSTM, VOC-GRU and VOC-BILSTM prediction models included in the framework to predict the daily newly confirmed cases.

          Results

          We analyzed daily newly confirmed cases in Italy, South Korea, Russia, Japan and India from April 14th, 2021 to July 3rd, 2021. The experimental results show that all VOC-DL models proposed in this paper can accurately predict the pandemic trend in the medium and long term, and VOC-LSTM model has the best prediction performance, with the highest average determination coefficient R2 of 96.83% in five nations’ datasets. The overall prediction has robustness.

          Conclusions

          : The experimental results show that VOC-LSTM is the best predictor for such a series of data and has higher prediction accuracy in the long run. At the same time, our VOC-DL framework combining VOC variants has reference significance for predicting other variants in the future.

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          Most cited references23

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          Long Short-Term Memory

          Learning to store information over extended time intervals by recurrent backpropagation takes a very long time, mostly because of insufficient, decaying error backflow. We briefly review Hochreiter's (1991) analysis of this problem, then address it by introducing a novel, efficient, gradient-based method called long short-term memory (LSTM). Truncating the gradient where this does not do harm, LSTM can learn to bridge minimal time lags in excess of 1000 discrete-time steps by enforcing constant error flow through constant error carousels within special units. Multiplicative gate units learn to open and close access to the constant error flow. LSTM is local in space and time; its computational complexity per time step and weight is O(1). Our experiments with artificial data involve local, distributed, real-valued, and noisy pattern representations. In comparisons with real-time recurrent learning, back propagation through time, recurrent cascade correlation, Elman nets, and neural sequence chunking, LSTM leads to many more successful runs, and learns much faster. LSTM also solves complex, artificial long-time-lag tasks that have never been solved by previous recurrent network algorithms.
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            Bidirectional recurrent neural networks

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              Deep Learning Methods for Forecasting COVID-19 Time-Series Data: A Comparative Study

              Highlights • Developed deep learning methods to forecast the COVID19 spread • Five deep learning models have been compared for COVID-19 forecasting • Time-series COVID19 data from Italy, Spain, France, China, the USA, and Australia are used. • Results demonstrate the potential of deep learning models to forecast COVID19 data • Results show the superior performance of the Variational AutoEncoder model
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                Author and article information

                Journal
                Comput Methods Programs Biomed
                Comput Methods Programs Biomed
                Computer Methods and Programs in Biomedicine
                Published by Elsevier B.V.
                0169-2607
                1872-7565
                30 June 2022
                30 June 2022
                : 106981
                Affiliations
                [a ]School of Computer Science and Engineering, Central South University, Changsha 410083, China
                [b ]Hunan University of Finance and Economics, Changsha 410083, China
                [c ]Nuffield health Research Group, Nuffield Health, Ashley Avenue, Epsom, Surrey, KT18 5AL, UK
                Author notes
                [* ]Corresponding Author: Shengbing Ren, School of Computer Science and Engineering, Central South University, Changsha, 410083, China
                [** ]Zhining Liao, Nuffield health Research Group, Nuffield Health, Ashley Avenue, Epsom, Surrey, KT18 5AL, UK
                Article
                S0169-2607(22)00363-7 106981
                10.1016/j.cmpb.2022.106981
                9242688
                35863125
                1ca4d999-484a-40c6-b201-84252c2a64d2
                © 2022 Published by Elsevier B.V.

                Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.

                History
                : 25 April 2022
                : 11 June 2022
                : 27 June 2022
                Categories
                Article

                Bioinformatics & Computational biology
                covid-19,voc-dl model,variant,lstm,prediction,time series
                Bioinformatics & Computational biology
                covid-19, voc-dl model, variant, lstm, prediction, time series

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