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      Heterogeneity of Microbial Communities on Deep-Sea Ferromanganese Crusts in the Takuyo-Daigo Seamount

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          Abstract

          Rock outcrops of aged deep-sea seamounts are generally covered with Fe and Mn oxides, known as ferromanganese (Fe–Mn) crusts. Although the presence of microorganisms in Fe–Mn crusts has been reported, limited information is currently available on intra- and inter-variations in crust microbial communities. Therefore, we collected several Fe–Mn crusts in bathyal and abyssal zones (water depths of 1,150–5,520 m) in the Takuyo-Daigo Seamount in the northwestern Pacific, and examined microbial communities on the crusts using culture-independent molecular and microscopic analyses. Quantitative PCR showed that microbial cells were abundant (10 6–10 8 cells g −1) on Fe–Mn crust surfaces through the water depths. A comparative 16S rRNA gene analysis revealed community differences among Fe–Mn crusts through the water depths, which may have been caused by changes in dissolved oxygen concentrations. Moreover, community differences were observed among positions within each Fe–Mn crust, and potentially depended on the availability of sinking particulate organic matter. Microscopic and elemental analyses of thin Fe–Mn crust sections revealed the accumulation of microbial cells accompanied by the depletion of Mn in valleys of bumpy crust surfaces. Our results suggest that heterogeneous and abundant microbial communities play a role in the biogeochemical cycling of Mn, in addition to C and N, on crusts and contribute to the extremely slow growth of Fe–Mn crusts.

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          Photosynthetic rates derived from satellite-based chlorophyll concentration

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            Age, spreading rates, and spreading asymmetry of the world's ocean crust

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              Archaeal dominance in the mesopelagic zone of the Pacific Ocean.

              The ocean's interior is Earth's largest biome. Recently, cultivation-independent ribosomal RNA gene surveys have indicated a potential importance for archaea in the subsurface ocean. But quantitative data on the abundance of specific microbial groups in the deep sea are lacking. Here we report a year-long study of the abundance of two specific archaeal groups (pelagic euryarchaeota and pelagic crenarchaeota) in one of the ocean's largest habitats. Monthly sampling was conducted throughout the water column (surface to 4,750 m) at the Hawai'i Ocean Time-series station. Below the euphotic zone (> 150 m), pelagic crenarchaeota comprised a large fraction of total marine picoplankton, equivalent in cell numbers to bacteria at depths greater than 1,000 m. The fraction of crenarchaeota increased with depth, reaching 39% of total DNA-containing picoplankton detected. The average sum of archaea plus bacteria detected by rRNA-targeted fluorescent probes ranged from 63 to 90% of total cell numbers at all depths throughout our survey. The high proportion of cells containing significant amounts of rRNA suggests that most pelagic deep-sea microorganisms are metabolically active. Furthermore, our results suggest that the global oceans harbour approximately 1.3 x 10(28) archaeal cells, and 3.1 x 10(28) bacterial cells. Our data suggest that pelagic crenarchaeota represent one of the ocean's single most abundant cell types.
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                Author and article information

                Journal
                Microbes Environ
                Microbes Environ
                Microbes and Environments
                the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI)
                1342-6311
                1347-4405
                December 2018
                30 October 2018
                : 33
                : 4
                : 366-377
                Affiliations
                [1 ] Ore Genesis Research Unit, Project Team for Development of New-generation Research Protocol for Submarine Resources, Japan Agency for Marine-Earth Science and Technology (JAMSTEC) Yokosuka, Kanagawa, 237–0061 Japan
                [2 ] Research and Development Center for Submarine Resources, JAMSTEC Yokosuka, Kanagawa, 237–0061 Japan
                [3 ] Department of Subsurface Geobiological Analysis and Research, JAMSTEC Yokosuka, Kanagawa, 237–0061 Japan
                [4 ] Center for Advanced Marine Core Research, Kochi University Nankoku, Kochi, 738–8502 Japan
                [5 ] Department of Marine & Earth Sciences, Marine Works Japan, Ltd. Yokosuka, Kanagawa 237–0061 Japan
                [6 ] Research and Development Center for Marine Biosciences, JAMSTEC Yokosuka, Kanagawa, 237–0061 Japan
                Author notes
                [* ]Corresponding author. E-mail: skato@ 123456jamstec.go.jp ; Tel: +81–46–867–9313; Fax: +81–46–867–9315.
                [†]

                Present address: Japan Collection of Microorganisms (JCM), RIKEN BioResource Research Center. 3–1–1 Koyadai, Tsukuba, Ibaraki 305–0074, Japan. E-mail: skato@ 123456riken.jp ; Tel: +81–29–846–0012; FAX: +81–29–836–9562.

                Article
                33_366
                10.1264/jsme2.ME18090
                6307992
                30381615
                1af475a3-fc51-4339-a663-99cd2ba2ee98
                Copyright © 2018 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 13 June 2018
                : 01 August 2018
                Categories
                Articles

                deep-sea ferromanganese crusts,microbial community,biogeochemical cycling,16s rrna gene analysis

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