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      Autochthonous carbon loading of macroalgae stimulates benthic biological nitrogen fixation rates in shallow coastal marine sediments

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          Abstract

          Macroalgae, commonly known as seaweed, are foundational species in coastal ecosystems and contribute significantly to coastal primary production globally. However, the impact of macroalgal decomposition on benthic biological nitrogen fixation (BNF) after deposition to the seafloor remains largely unexplored. In this study, we measure BNF rates at three different sites at the Big Fisherman's Cove on Santa Catalina Island, CA, USA, which is representative of globally distributed rocky bottom macroalgal habitats. Unamended BNF rates varied among sites (0.001–0.05 nmol N g −1 h −1) and were generally within the lower end of previously reported ranges. We hypothesized that the differences in BNF between sites were linked to the availability of organic matter. Indeed, additions of glucose, a labile carbon source, resulted in 2–3 orders of magnitude stimulation of BNF rates in bottle incubations of sediment from all sites. To assess the impact of complex, autochthonous organic matter, we simulated macroalgal deposition and remineralization with additions of brown (i.e., Macrocystis pyrifera and Dictyopteris), green (i.e., Codium fragile), and red (i.e., Asparagopsis taxiformis) macroalgae. While brown and green macroalgal amendments resulted in 53- to 520-fold stimulation of BNF rates—comparable to the labile carbon addition—red alga was found to significantly inhibit BNF rates. Finally, we employed nifH sequencing to characterize the diazotrophic community associated with macroalgal decomposition. We observed a distinct community shift in potential diazotrophs from primarily Gammaproteobacteria in the early stages of remineralization to a community dominated by Deltaproteobacteria (e.g., sulfate reducers), Bacteroidia, and Spirochaeta toward the latter phase of decomposition of brown, green, and red macroalgae. Notably, the nifH-containing community associated with red macroalgal detritus was distinct from that of brown and green macroalgae. Our study suggests coastal benthic diazotrophs are limited by organic carbon and demonstrates a significant and phylum-specific effect of macroalgal loading on benthic microbial communities.

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          DADA2: High resolution sample inference from Illumina amplicon data

          We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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            Cutadapt removes adapter sequences from high-throughput sequencing reads

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              Substantial role of macroalgae in marine carbon sequestration

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                Author and article information

                Contributors
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                URI : http://loop.frontiersin.org/people/761177/overviewRole: Role: Role: Role:
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                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                05 January 2024
                2023
                : 14
                : 1312843
                Affiliations
                [1] 1Marine and Environmental Biology, University of Southern California , Los Angeles, CA, United States
                [2] 2Earth System Science, Stanford University , Stanford, CA, United States
                Author notes

                Edited by: Xianbiao Lin, Ocean University of China, China

                Reviewed by: Xiaoli Zhang, Chinese Academy of Sciences (CAS), China

                Fenfang Wang, Jimei University, China

                *Correspondence: Yubin Raut yubinrau@ 123456usc.edu
                Article
                10.3389/fmicb.2023.1312843
                10796445
                38249476
                11f191af-2c58-4ec3-860c-f45d3baa5ef9
                Copyright © 2024 Raut, Barr, Paris, Kapili, Dekas and Capone.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 10 October 2023
                : 23 November 2023
                Page count
                Figures: 9, Tables: 1, Equations: 0, References: 79, Pages: 16, Words: 10795
                Funding
                The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. YR was supported to do this study at WIES through the summer Wrigley/Victoria J. Bertics Fellowships (2017-2019). This work was partially supported by Stanford University through research and graduate student funding to AED.
                Categories
                Microbiology
                Original Research
                Custom metadata
                Microbiological Chemistry and Geomicrobiology

                Microbiology & Virology
                benthic n2 fixation,macroalgal decomposition,diazotroph community,coastal marine sediments,nifh amplicon sequencing

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