Complete genome sequences of microbacterium phages Tedro and BAjuniper

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ABSTRACT

We purified two novel bacteriophages from soil collected in Sioux County, Iowa: BAjuniper and Tedro. These bacteriophages were isolated from the host, Microbacterium foliorum. BAjuniper was assigned to cluster EB, and Tedro was assigned to cluster EF. Both phages display genomes typical of other phages in their clusters.

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Most cited references 21

Record: found
Abstract: found
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Basic local alignment search tool.

Stephen F Altschul, Warren Gish, Webb Miller … (1990)

A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score. Recent mathematical results on the stochastic properties of MSP scores allow an analysis of the performance of this method as well as the statistical significance of alignments it generates. The basic algorithm is simple and robust; it can be implemented in a number of ways and applied in a variety of contexts including straightforward DNA and protein sequence database searches, motif searches, gene identification searches, and in the analysis of multiple regions of similarity in long DNA sequences. In addition to its flexibility and tractability to mathematical analysis, BLAST is an order of magnitude faster than existing sequence comparison tools of comparable sensitivity.

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Record: found
Abstract: found
Article: not found

NIH Image to ImageJ: 25 years of image analysis

Kevin W Eliceiri, Caroline A Schneider, Wayne S Rasband (2018)

For the past twenty five years the NIH family of imaging software, NIH Image and ImageJ have been pioneers as open tools for scientific image analysis. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.

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Record: found
Abstract: found
Article: not found

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Todd Lowe, Sean R. Eddy (1997)

We describe a program, tRNAscan-SE, which identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at approximately 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.

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Author and article information

Contributors

Grace M. Anderson: Role: Investigation

Olivia E. Anderson: Role: Investigation

Clayton A. Bosma: Role: Investigation

Erin E. Brouwer: Role: Investigation

Kleyton M. DeGroot: Role: Investigation

Owen C. Hede: Role: Investigation

Daiki Jonouchi: Role: Investigation

Dylan J. Kirkeby: Role: Investigation

Jayron T. Klinghagen: Role: Investigation

Kate J. Kralik: Role: Investigation

Julia S. Kutz: Role: Investigation

Olivia F. Lott: Role: Investigation

Erika J. McKenney: Role: Investigation

Victoria L. Pavik: Role: Investigation

Cayli H. Penner: Role: Investigation

Garrett Raymon: Role: Investigation

Leah B. Rozeboom: Role: Investigation

Jett L. Skrien: Role: Investigation

Jessica K. Slight: Role: Investigation

Maegan J. Stokes: Role: Investigation

Jonas D. Tiensvold: Role: Investigation

Kyra J. Wajer: Role: Investigation

Alaena L. Trevino: Role: Investigation

Byron Noordewier: Role: InvestigationRole: Project administration

Sara S. Tolsma:

ORCID: https://orcid.org/0000-0002-2687-4457

Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: Project administrationRole: ResourcesRole: SupervisionRole: ValidationRole: Writing – original draft

John J. Dennehy: Role: Editor

Journal

Journal ID (nlm-ta): Microbiol Resour Announc

Journal ID (iso-abbrev): Microbiol Resour Announc

Journal ID (publisher-id): mra

Title: Microbiology Resource Announcements

Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )

ISSN (Electronic): 2576-098X

Publication date (Electronic, collection): November 2023

Publication date (Electronic, pub): 31 October 2023

Publication date PMC-release: 31 October 2023

Volume: 12

Issue: 11

Electronic Location Identifier: e00793-23

Affiliations

[1 ] Department of Biology, Northwestern College; , Orange City, Iowa, USA

Department of Biology, Queens College; , New York, USA

Author notes

Address correspondence to Sara S. Tolsma, stolsma@ 123456nwciowa.edu

The authors declare no conflict of interest.

Author information

Sara S. Tolsma https://orcid.org/0000-0002-2687-4457

Article

Publisher ID: 00793-23 Publisher ID: MRA.00793-23

DOI: 10.1128/MRA.00793-23

PMC ID: 10652889

PubMed ID: 37905824

SO-VID: 071c9b8d-9fd5-4cc5-9e51-1e632186c0ef

License:

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

History

Date received : 24 August 2023

Date accepted : 27 September 2023

Page count

supplementary-material: 0, authors: 25, Figures: 1, Tables: 1, References: 22, Pages: 4, Words: 1738

Custom metadata

cover-date November 2023

Keywords: bacteriophage,microbacterium phage

Data availability:

Keywords: bacteriophage, microbacterium phage

Complete genome sequences of microbacterium phages Tedro and BAjuniper

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ABSTRACT

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Genome Integrity

Most cited references 21

Basic local alignment search tool.

NIH Image to ImageJ: 25 years of image analysis

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

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Author notes

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