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      Effects of Smoking and Smoking Cessation on the Intestinal Microbiota

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          Abstract

          We evaluated associations of smoking heaviness markers and the effects of smoking cessation on the intestinal microbiota and cardiovascular disease risk factors in current smokers undertaking a quit attempt. Participants were current smokers enrolled in a prospective randomized clinical trial of smoking cessation therapies with visits at baseline, 2, and 12 weeks. Genomic DNA was extracted from fecal samples followed by 16S rRNA gene sequencing and analysis using the QIIME2 software workflow. Relative abundances of bacterial taxa and alpha- and beta-diversity measures were used for comparisons. The 36 smokers were (mean (standard deviation)) 51.5 (11.1) years old (42% male) and smoked 15.1 (6.4) cigarettes per day for 22.7 (11.9) pack-years. Relative abundances of the phylum Actinobacteria correlated with pack-years (rho = −0.44, p = 0.008) and Cyanobacteria correlated with CO levels (rho = 0.39, p = 0.021). After 12 weeks, relative abundances of the phylum Bacteroidetes increased ( p ANCOVA = 0.048) and Firmicutes decreased ( p ANCOVA = 0.036) among abstainers compared to continuing smokers. Increases in alpha-diversity were associated with heart rates (rho = −0.59, p = 0.037), systolic blood pressures (rho = −0.58, p = 0.043), and C-reactive protein (rho = −0.60, p = 0.034). Smoking cessation led to minor changes in the intestinal microbiota. It is unclear if the proven health benefits of smoking cessation lead to salutary changes in the intestinal microbiota.

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          DADA2: High resolution sample inference from Illumina amplicon data

          We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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                Author and article information

                Journal
                J Clin Med
                J Clin Med
                jcm
                Journal of Clinical Medicine
                MDPI
                2077-0383
                14 September 2020
                September 2020
                : 9
                : 9
                : 2963
                Affiliations
                [1 ]Department of Medicine, University of Wisconsin School of Medicine and Public Health, Madison, WI 53792, USA; msublette@ 123456uwhealth.org (M.G.S.); ck4@ 123456medicine.wisc.edu (C.E.K.); khansen2@ 123456uwhealth.org (K.M.H.); mkoguss@ 123456medicine.wisc.edu (M.K.O.)
                [2 ]Department of Nutrition Science, Purdue University, West Lafayette, Indiana, 47907, USA; tlcross@ 123456purdue.edu
                [3 ]Department of Bacteriology, University of Wisconsin, Madison, WI 53706, USA; murgagarrido@ 123456wisc.edu (S.M.M.-G.); hazens@ 123456ccf.org (S.L.H.); ferey@ 123456wisc.edu (F.E.R.)
                [4 ]Department of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA; wangz2@ 123456ccf.org
                Author notes
                [* ]Correspondence: jhs@ 123456medicine.wisc.edu
                Author information
                https://orcid.org/0000-0003-4527-9407
                https://orcid.org/0000-0002-6455-8228
                https://orcid.org/0000-0002-2770-8223
                Article
                jcm-09-02963
                10.3390/jcm9092963
                7564179
                32937839
                069afa65-bdd2-43dc-81f3-a756d10993e0
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 17 July 2020
                : 10 September 2020
                Categories
                Article

                cardiovascular disease,gut flora,microbiome,smoking,smoking cessation

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