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      More Mouldy Data: Another mycoplasma gene jumps the silicon barrier into the human genome

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          Abstract

          The human genome sequence database contains DNA sequences very like those of mycoplasma molds. It appears such moulds infect not only molecular Biology laboratories but were picked up by experimenters from contaminated samples and inserted into GenBank as if they were human. At least one mouldy EST (Expressed Sequence Tag) has transferred from public databases to commercial tools (Affymetrix HG-U133 plus 2.0 microarrays). We report a second example (DA466599) and suggest there is a need to clean up genomic databases but fear current tools will be inadequate to catch genes which have jumped the silicon barrier.

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          On the mechanism of the development of multiple-drug-resistant clones of Shigella.

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            Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al.

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              Author and article information

              Journal
              21 June 2011
              Article
              10.1007/978-3-642-29066-4_22
              1106.4192
              02d950ec-3217-46cf-bdf4-4d6cf0a2d8ea

              http://arxiv.org/licenses/nonexclusive-distrib/1.0/

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              RN/11/14
              Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics Lecture Notes in Computer Science Volume 7246, 2012, pp 245-249
              data directory contains results of AF241217 and DA466599 blast runs by EBI in Cambridge
              q-bio.GN

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