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Handbook of Molecular Microbial Ecology II : Metagenomics in Different Habitats
edited_book
Editor(s):
Frans J. de Bruijn
Publication date
(Print):
September 16 2011
Publisher:
John Wiley & Sons, Inc.
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Microbial Genomics
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Book
ISBN (Electronic):
9781118010549
ISBN (Print):
9780470647196
Publication date (Print):
September 16 2011
DOI:
10.1002/9781118010549
SO-VID:
6caf220b-8d79-42b3-9b22-dcd628e33a5f
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Book chapters
pp. i
Frontmatter
pp. 1
Introduction
pp. 3
Viral Metagenomics
pp. 15
Methods in Viral Metagenomics
pp. 25
Metagenomic Contrasts of Viruses in Soil and Aquatic Environments
pp. 37
Biodiversity and Biogeography of Phages in Modern Stromatolites and Thrombolites
pp. 45
Assembly of Viral Metagenomes from Yellowstone Hot Springs Reveals Phylogenetic Relationships and Host Co-Evolution
pp. 63
Next-Generation Sequencing and Metagenomic Analysis: A Universal Diagnostic Tool in Plant Pathology
pp. 73
Direct Metagenomic Detection of Viral Pathogens in Human Specimens Using an Unbiased High-Throughput Sequencing Approach
pp. 81
Soil-Based Metagenomics
pp. 93
Methods in Metagenomic DNA, RNA, and Protein Isolation from Soil
pp. 109
Soil Microbial DNA Purification Strategies for Multiple Metagenomic Applications
pp. 117
Application of PCR-DGGE and MetagenomeWalking to Retrieve Full-Length Functional Genes from Soil
pp. 125
Actinobacterial Diversity Associated with Antarctic Dry Valley Mineral Soils
pp. 135
Targeting Major Soil-Borne Bacterial Lineages Using Large-Insert Metagenomic Approaches
pp. 143
Novelty and Uniqueness Patterns of Rare Members of the Soil Biosphere
pp. 151
Extensive Phylogenetic Analysis of a Soil Bacterial Community Illustrates Extreme Taxon Evenness and the Effects of Amplicon Length, Degree of Coverage, and DNA Fractionation on Classification and Ecological Parameters
pp. 165
The Antibiotic Resistome: Origins, Diversity, and Future Prospects
pp. 175
Functional Intestinal Metagenomics
pp. 191
Assessment and Improvement of Methods for Microbial DNA Preparation from Fecal Samples
pp. 199
The Role of Dysbiosis in Inflammatory Bowel Diseases
pp. 207
Culture-Independent Analysis of the Human Gut Microbiota and their Activities
pp. 221
Complete Genome of an Uncultured Endosymbiont Coupling Nitrogen Fixation to Cellulolysis within Protist Cells in Termite Gut
pp. 229
Cloning and Identification of Genes Encoding Acidic Cellulases from the Metagenomes of Buffalo Rumen
pp. 243
Microbial Diversity in the Deep Sea and the Underexplored “Rare Biosphere”
pp. 253
Bacterial Community Structure and Dynamics in a Seasonally Anoxic Fjord: Saanich Inlet, British Columbia
pp. 269
Adaptation to Nutrient Availability in Marine Microorganisms by Gene Gain and Loss
pp. 277
Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities
pp. 287
Metagenomic Approach Studying the Taxonomic and Functional Diversity of the Bacterial Community in a Lacustrine Ecosystem
pp. 295
Metagenomics of the Marine Subsurface: The First Glimpse from the Peru Margin, ODP Site 1229
pp. 301
A Targeted Metagenomic Approach to Determine the “Population Genome” of MarineSynechococcus
pp. 309
Diversity and Role of Bacterial Integron/Gene Cassette Metagenome in Extreme Marine Environments
pp. 319
TheOlavius algarvensisMetagenome Revisited: Lessons Learned from the Analysis of the Low-Diversity Microbial Consortium of a Gutless Marine Worm
pp. 335
Microbiome Diversity in Human Saliva
pp. 341
Approaches to Understanding Population Level Functional Diversity in a Microbial Community
pp. 355
A Functional Metagenomic Approach for Discovering Nickel Resistance Genes from the Rhizosphere of an Acid Mine Drainage Environment
pp. 367
The Microbiome of Leaf-Cutter Ant Fungus Gardens
pp. 381
Diversity of Archaea in Terrestrial Hot Springs and Role in Ammonia Oxidation
pp. 395
Colonization of Nascent, Deep-Sea Hydrothermal Vents by a Novel Archaeal and Nanoarchaeal Assemblage
pp. 403
Analysis of the Metagenome from a Biogas-Producing Microbial Community by Means of Bioinformatics Methods
pp. 415
Amplicon Pyrosequencing Analysis of Endosymbiont Population Structure
pp. 423
Investigating Bacterial Diversity Along Alkaline Hot-Spring Thermal Gradients by Barcoded Pyrosequencing
pp. 429
Genetic Characterization of Microbial Communities Living at the Surface of Building Stones
pp. 437
Novel Aromatic Degradation Pathway Genes and their Organization as Revealed by Metagenomic Analysis
pp. 451
Functional Screening a Wide Host-Range Metagenomic Library from a Wastewater Treatment Plant Yields a Novel Alcohol/Aldehyde Dehydrogenase
pp. 461
Aromatic Hydrocarbon Degradation Genes from Chronically Polluted Subantarctic Marine Sediments
pp. 475
Isolation and Characterization of Alkane Hydroxylases from a Metagenomic Library of Pacific Deep-Sea Sediment
pp. 481
Emerging Fields in Functional Metagenomics and Its Industrial Relevance: Overcoming Limitations and Redirecting the Search for Novel Biocatalysts
pp. 499
Carboxylesterases and Lipases from Metagenomes
pp. 507
Expanding Small-Molecule Functional Metagenomics through Parallel Screening of Broad Host-Range Cosmid Environmental DNA Libraries in DiverseProteobacteria
pp. 517
Biomedicinals from the Microbial Metagenomes of Marine Invertebrates
pp. 545
Molecular Characterization of TEM-Type Beta-Lactamases Identified in Cold-Seep Sediments of Edison Seamount (South of Lihir Island, Papua New Guinea)
pp. 553
Identification of Novel Bioactive Compounds from the Metagenome of the Marine SpongeHaliclona simulans
pp. 563
Functional Viral Metagenomics and the Development of New Enzymes for DNA and RNA Amplification and Sequencing
pp. 579
Metagenomics: The Paths Forward
pp. 589
Darwin in the Twenty-First Century: Natural Selection, Molecular Biology, and Species Concepts
pp. 597
Index
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