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      Rescuing biogeographic legacy data: The "Thor" Expedition, a historical oceanographic expedition to the Mediterranean Sea

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          Abstract

          Abstract
          Background

          This article describes the digitization of a series of historical datasets based οn the reports of the 1908–1910 Danish Oceanographical Expeditions to the Mediterranean and adjacent seas. All station and sampling metadata as well as biodiversity data regarding calcareous rhodophytes, pelagic polychaetes, and fish (families Engraulidae and Clupeidae ) obtained during these expeditions were digitized within the activities of the LifeWatchGreece Research Ιnfrastructure project and presented in the present paper. The aim was to safeguard public data availability by using an open access infrastructure, and to prevent potential loss of valuable historical data on the Mediterranean marine biodiversity.

          New information

          The datasets digitized here cover 2,043 samples taken at 567 stations during a time period from 1904 to 1930 in the Mediterranean and adjacent seas. The samples resulted in 1,588 occurrence records of pelagic polychaetes, fish ( Clupeiformes ) and calcareous algae ( Rhodophyta ). In addition, basic environmental data (e.g. sea surface temperature, salinity) as well as meterological conditions are included for most sampling events. In addition to the description of the digitized datasets, a detailed description of the problems encountered during the digitization of this historical dataset and a discussion on the value of such data are provided.

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          Most cited references17

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          New developments in museum-based informatics and applications in biodiversity analysis.

          Information from natural history collections (NHCs) about the diversity, taxonomy and historical distributions of species worldwide is becoming increasingly available over the Internet. In light of this relatively new and rapidly increasing resource, we critically review its utility and limitations for addressing a diverse array of applications. When integrated with spatial environmental data, NHC data can be used to study a broad range of topics, from aspects of ecological and evolutionary theory, to applications in conservation, agriculture and human health. There are challenges inherent to using NHC data, such as taxonomic inaccuracies and biases in the spatial coverage of data, which require consideration. Promising research frontiers include the integration of NHC data with information from comparative genomics and phylogenetics, and stronger connections between the environmental analysis of NHC data and experimental and field-based tests of hypotheses.
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            Detecting range shifts from historical species occurrences: new perspectives on old data.

            The difficulty of making valid comparisons between historical and contemporary data is an obstacle to documenting range change in relation to environmental modifications. Recent statistical advances use occupancy modeling to estimate simultaneously the probability of detection and the probability of occupancy, and enable unbiased comparisons between historical and modern data; however, they require repeated surveys at the same locations within a time period. We present two models for explicitly comparing occupancy between historical and modern eras, and discuss methods to measure range change. We suggest that keepers of historical data have crucial roles in curating and aiding accessibility to data, and we recommend that collectors of contemporary specimen data organize their sampling efforts to include repeated surveys to estimate detection probabilities.
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              • Article: not found

              The role of natural history collections in documenting species declines

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                Author and article information

                Contributors
                Journal
                Biodivers Data J
                Biodivers Data J
                Biodiversity Data Journal
                Biodiversity Data Journal
                Biodiversity Data Journal
                Pensoft Publishers
                1314-2828
                2016
                22 December 2016
                : 4
                : e11054
                Affiliations
                [1 ]Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece
                [2 ]Australian Museum Research Institute, Sydney, NSW, Australia
                [3 ]Institute of Oceanography, Hellenic Centre for Marine Research, Anavyssos, Athens, Greece
                [4 ]University of Patras, Department of Biology, Laboratory of Zoology, Rio, Patras, Greece
                Author notes
                Corresponding author: Sarah Faulwetter

                Academic editor: Nikos Minadakis

                Article
                Biodiversity Data Journal 6472
                10.3897/BDJ.4.e11054
                5267529
                e91262ae-34ab-4645-a219-4643fb8eadc0

                This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 04 November 2016
                : 15 December 2016
                Page count
                Figures: 9, Tables: 5, References: 16
                Categories
                Data Paper (Biosciences)
                Clupeidae
                Engraulidae
                Polychaeta
                Rhodophyta
                Data Management
                Biogeography
                Biodiversity & Conservation
                Bioinformatics

                marine biodiversity, rhodophyta , polychaeta , clupeiformes ,historical dataset,danish oceanographical expedition, digitization ,data management,data rescue,data archaeology

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